Chr:
Chr6
Start:
7422473
End:
7433216
Strand:
+
Ref_name:
OSA-LNCN5659
Sequence
(OSA-LNCN5659.1):
CAAUACGUGUGUAUGACACCUCCUAUUCUCGUCCAGAUUCUCAAGAGUUAUCGGGACCGAAUCGCCACCCGCCGCCGCCGCGGCCGCUCGCCGCUAGCCGGCCGCAUCCCCGUUGCAUCUUCCUUUGGCGGAAGCGGCACUCCAUCCAGUCUCGCCGAGUCUCCGGCCGAGGACUUCCAUCAGAAACUAUGGAGAAGACCAAAAAGAGAGGCUAGAAGGAUGAUGUCAGGCGUUGAAGUCAAGAUGGAGGGCCAACUCAUAUCAAGUUUGAGUCUACCUUAGGCUCUAGGAGUAGUCUGCGCUAAAAACAUCACGCAGCCGCAUUCAGACUCACAUAUGGAAAGCUAACGAGACCACCUUUCCAAUGGGUCUGGUCUCACGUCAAAAAUUCUUCUGAAAGAAGUGGCGUCCAGAAUCUAUCUGAGUGCUGCAUCACCAUCUUUUGGGCCGCUGGGCCAUGUAUCGUAUUGAAGUCCAAUAAUGAUGCUUCUAGAGGUCCUUGAUCGACCUAGCUAGAACCUAUAUUUGUUGAUUGAAAACCAGAUUGUGUGUACCAAGUUUCUGCCAAAUCGAUAAUCUCUACUUGAUGGAAGAUCGGGCACCCCAUUACCGUCAACAAAAUUUGUACCGUUGACAUUAACAUAUAUUACAACAACAUAGCCUAUAUAACUAGUAAAAUUGCAUUUUUUCC
Sequence
(OSA-LNCN5659.2):
GUGUGUAUGACACCUCCUAUUCUCGUCCAGAUUCUCAAGAGUUAUCGGGACCGAAUCGCCACCCGCCGCCGCCGCGGCCGCUCGCCGCUAGCCGGCCGCAUCCCCGUUGCAUCUUCCUUUGGCGGAAGCGGCACUCCAUCCAGUCUCGCCGAGUCUCCGGCCGAGGACUUCCAUCAGAUUUGCAGAUUAGGAAACGGAUGUGAUUACCAAAAAUAUUGAUUAUUGUAAAAAUAAACCGAUUACUGAAGGUGAUUCCGCUUGCGAUGGACGCCGGACAAAAACUUUUAUUAGGAACCUUACCUUACCUUAUUUUUUUAUUAGAGGAAAAAAACCAGGGAGGCCGACAAAAGUGGGGUCAUGCCAACUUCUCCCAUUCCAUCUGUUUCUUCUCCAUCUCGCCCUCUCUCGCACAUGUUGUGCAUGACGAGCGGCACAGGCACGGCAUGGCGCCGUCUGCACGCGCAAUGGCAUGUCGACGAGGCGACCACGACAAACCGGACAGGACAGUGAUGGCAUAUGGCCCUCGCAAGGCACUGUAGCGACGGCGACACGACAUGCGCAGAGCUGACUCGGAUCAUAGGUUUUAACGGGUUGUUUGGUUGAUGACUAAGUUUGCCACACCUCACUCUGUCACAAGUGUGUUAUGCCAUACAAAGUGAGACUAGCAAUUUGUUAGCCACAAGUAUAAUUAAGUUUGGCAAGAAUUUGAGUAUAUGGCGUGCAGGCCCAAUAAUUUAUAAAGUGAGGCAUGAUUUAGGUGUGGCAACUAACCAAAUACUAUACUAACAAAUUAUGGUAUGCUUAACGUUUGAUAUAGCAACCUUUGAGAGCCAACCAAACAGCCUAAUUUCAACCUAGCGCACGAGCAUAUUGCGCCUGUGAGAGUUGGUUUGAUUUUGCAAAG
Sequence
(OSA-LNCN5659.3):
AUGACACCUCCUAUUCUCGUCCAGAUUCUCAAGAGUUAUCGGGACCGAAUCGCCACCCGCCGCCGCCGCGGCCGCUCGCCGCUAGCCGGCCGCAUCCCCGUUGCAUCUUCCUUUGGCGGAAGCGGCACUCCAUCCAGUCUCGCCGAGUCUCCGGCCGAGGACUUCCAUCAGAGGAAAAAAACCAGGGAGGCCGACAAAAGUGGGGUCAUGCCAACUUCUCCCAUUCCAUCUGUUUCUUCUCCAUCUCGCCCUCUCUCGCACAUGUUGUGCAUGACGAGCGGCACAGGCACGGCAUGGCGCCGUCUGCACGCGCAAUGGCAUGUCGACGAGGCGACCACGACAAACCGGACAGGACAGUGAUGGCAUAUGGCCCUCGCAAGGCACUGUAGCGACGGCGACACGACAUGCGCAGAGCUGACUCGGAUCAUAGGUUUUAACGGGUUGUUUGGUUGAUGACUAAGUUUGCCACACCUCACUCUGUCACAAGUGUGUUAUGCCAUACAAAGUGAGACUAGCAAUUUGUUAGCCACAAGUAUAAUUAAGUUUGGCAAGAAUUUGAGUAUAUGGCGUGCAGGCCCAAUAAUUUAUAAAGUGAGGCAUGAUUUAGGUGUGGCAACUAACCAAAUACUAUACUAACAAAUUAUGGUAUGCUUAACGUUUGAUAUAGCAACCUUUGAGAGCCAACCAAACAGCCUAAUUUCAACCUAGCGCACGAGCAUAUUGCGCCUGUGAGAGUUGGUUUGAUUUUGCAAAG
Sequence
(OSA-LNCN5659.4):
CUCUAAGUUGUCAUGAAAGGUCCAAUCACUAGAGCUCGCAUUCAUAAAUUGCAAUAACAGAAACUAUGGAGAAGACCAAAAAGAGAGGCUAGAAGGAUGAUGUCAGGCGUUGAAGUCAAGAUGGAGGGCCAACUCAUAUCAAGUUUGAGUCUACCUUAGGCUCUAGGAGUAGUCUGCGCUAAAAACAUCACGCAGCCGCAUUCAGACUCACAUAUGGAAAGCUAACGAGACCACCUUUCCAAUGGGUCUGGUCUCACGUCAAAAAUUCUUCUGAAAGAAGUGGCGUCCAGAAUCUAUCUGAGUGCUGCAUCACCAUCUUUUGGGCCGCUGGGCCAUGUAUCGUAUUGAAGUCCAAUAAUGAUGCUUCUAGAGGUCCUUGAUCGACCUAGCUAGAACCUAUAUUUGUUGAUUGAAAACCAGAUUGUGUGUACCAAGUUUCUGCCAAAUCGAUAAUCUCUACUUGAUGGAAGAUCGGGCACCCCAUUACCGUCAACAAAAUUUGUACCGUUGACAUUAACAUAUAUUACAACAACAUAGCCUAUAUAACUAGUAAAAUUGCAUUUUUUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.23%
ME_num:
MEP:
28.25%
HE_num:
HEP:
7.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
3.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.49685034092398 | 0.00130931617795235 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.40034148928038 | 0.000657450057268001 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.59282089457417 | 0.033759403888442 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.63992572221562 | 0.0445564141863768 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -5.05146927634555 | 0.000559027868872242 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -5.05160262346437 | 0.000566069356710427 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -5.05160202808477 | 0.000560648746376548 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.31152324695341 | 9.03390339378778e-27 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.82323533361795 | 7.1868000899129e-05 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -4.36465519720489 | 1.48917947284651e-33 |