Chr:
Chr6
Start:
6990560
End:
6997661
Strand:
+
Ref_name:
OSA-LNCN5652
Sequence
(OSA-LNCN5652.1):
CUUUUACUACAGGACAUCGCGACUUUGUGAAAUUAGCUCCAGGACACCGCACGAAGUGAGUUUUGGGGGAAGACACUCCUAAAACAUGGCUAUUUGCCAGAGGACACCGCGCCCAUUUGUUUAGUGUAUUCGUGCUGACUAGGCUUGAGUGGGCCCAUAUUUUGACGCGACCGGACCAAAUUGCCCUGCACAUCUAAAGUCUAAUUUCCCUCCCUCGCGCUACUGAACGUCUUCAACCUCCAGCUCUCAUGCCCGUGCGCCACACCGCCACCUCCCCCUCCAAAUUCGGCCAAUCCCGUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
43.9%
ME_num:
MEP:
43.9%
HE_num:
HEP:
11.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.88
Avg Expression:
13.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.22729680083432 | 0.0222844371714815 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.10199483858296 | 6.83993802307369e-06 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.32699275335997 | 0.00130517817543708 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.06513428693456 | 2.31134447512347e-05 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.56365417567115 | 0.000213706954458459 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.81457945604188 | 2.54308822105412e-05 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.05699337661956 | 0.00063785283831601 |
8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.00886559772601 | 0.0366518700002425 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.93174203964727 | 0.0468777946233839 |
10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.24653296589883 | 0.00720385375122839 |