Chr:
Chr6
Start:
5683241
End:
5692161
Strand:
-
Ref_name:
OSA-LNCN5636
Sequence
(OSA-LNCN5636.1):
CUUCCCCUUUCUUCCUCUUCCUUUUUCUUUCCUCCUUGCUACCUCCUCAGCUCCUCUCUCUACCCCACCAUCCACUCUCUUCUCCAAUAGCAAGUGGGAGCAAGGGCGCCAGCAGUAGCUCACGGGCGGACAGGGCGCCAGCAGUAGCUCACCUGCUGCCGCAUCUCAGCGCCGGCGACGGCGGCACCAGGCGAGCGCGUAGGGGCGACGGCAGCACCUCGUGGGUGGAGGGCCGCCGGCGACGGGCGGAGCGGCUGCCGCAUCCCGGAGCCUGGCGGCGGCACCGGGCGAGCGUGGAGCGGCAACGACAGCAGCUUGCGGAUGGAGGGGCGACGACAACAACUCGCGAGUGAAGGGGCGCUGGCUACGGCCAGAGCGGCUGCCGCACCUCGGCGCGGCUGACGGCGGGAGCUUCCAGAUCUGCUUAUUUGGAUUGGCGGAUUUUCAAUGGAUUUGUGGAGGAUUCAAAUCAUUAGGAUUUUAUUCAUAUGGCGUCCUUUGGAUUGAUGAUACAAAACUUUAAAAAUCCUAUGGAUUUUGGUUUUCCUAUGUCGCAUUUCCAAGGAAAGUAAACAUGAACUCUA
Sequence
(OSA-LNCN5636.2):
CUUCCCCUUUCUUCCUCUUCCUUUUUCUUUCCUCCUUGCUACCUCCUCAGCUCCUCUCUCUACCCCACCAUCCACUCUCUUCUCCAAUAGCAAGUGGGAGCAAGGGCGCCAGCAGUAGCUCACGGGCGGACAGGGCGCCAGCAGUAGCUCACCUGCUGCCGCAUCUCAGCGCCGGCGACGGCGGCACCAGGCGAGCGCGUAGGGGCGACGGCAGCACCUCGUGGGUGGAGGGCCGCCGGCGACGGGCGGAGCGGCUGCCGCAUCCCGGAGCCUGGCGGCGGCACCGGGCGAGCGUGGAGCGGCAACGACAGCAGCUUGCGGAUGGAGGGGCGACGACAACAACUCGCGAGUGAAGGGGCGCUGGCUACGGCCAGAGCGGCUGCCGCACCUCGGCGCGGCUGACGGCGGGAGCUUCCAGAUCUGGUGGAGCAGUGGAGGAUUUGAAACUGGAAUCCAAAAACAAGCUCUUAUCUUACACCCUGUCGAAAAACAUGCGCAGAUGGCAAUUCAACCUCCAAUGCCUUUGCCUCCUAGCUUAUUUGGAUUGGCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.24%
ME_num:
MEP:
72.76%
HE_num:
HEP:
11.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.81
Avg Expression:
13.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.08038941876712 | 0.0283636674992531 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.41061170612934 | 0.0200998716375549 |
3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 2.07479319589523 | 0.0353715350850116 |