Chr:
Chr6
Start:
5591050
End:
5591521
Strand:
.
Ref_name:
OSA-LNCN5635
Sequence
(OSA-LNCN5635.1):
UAUUUCACUUGGAUUUGAACCUCACGGUUCUAUGGGCUAUGGGAUUAUGCAUAGUUCUAUGCAUACCUGAUAUGUUGAACUUAUUUUCUUUAUUUGUUUGAGUAGGCAGUGUUAUGCGCAUUCAUCUUUUGCAUCUCUAUAGUCUUUUCGCUGUCCAAUAAUGGAUUGCUUGGUUUAGUUAUGGAUGGAUCUGCUUAUCCUAAGCACCGUUGAAACCUGCAUGGAUCUUUUUUGCUUCGCACUUUGGACAUUCAUCUUCUUGUUUCGCUUUAGUCUCAGCCACACCCAUACAGACAAUCUUGAGUUAGGCAGGAGCUACAUAGUAACAUAGGUAAGCUUGGAUUUAAGACCUAAGUGGGAAUUUUAUUGAAGCAUCUUCUUUCAUGUACAAAGUUGCUCUGUGGCUUCUAUUGCAUGACCAUACCUAUUCCCACAUGGUUAUGCUCUGUUGUCUUUCCUCUUCUGUUGUGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.0%
ME_num:
MEP:
24.59%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.69
Avg Expression:
0.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.20531485172255 | 0.00444950249699052 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.58993249269044 | 0.00127514405627883 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.17991452633931 | 9.66449974804544e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.05597375311043 | 0.0352465547965935 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.67249548918836 | 0.00060550543717686 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.87746470247775 | 0.000169879407037189 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.11157594415215 | 1.91804540420913e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.47421052221297 | 9.92296874574604e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.6347965662395 | 1.61544836533318e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.59947632264282 | 0.000850582855942025 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.95238376695867 | 2.70351618578248e-07 |