Chr:
Chr6
Start:
5590917
End:
5594851
Strand:
+
Ref_name:
OSA-LNCN5634
Sequence
(OSA-LNCN5634.1):
UGAAGAGAGCAAGAAAAUUACUGAAUGAUGCUAAAUAGUUGAUGAUUGCACCUUGGCAGGUGCAUUUUGGUGGAGUACAUAGCUGGAUACAUAGGUGCGAUGUCCAUUUUGUAGGCUGAUCAACCCAUCCUAUACUUGGUUGCUGACUGACAAGGCCCUAACACGGUGUGCUGUGCUGCACAGAUUGCACGACGACUCUGUCGUGCCAAAUUUAUGCCUAAUUCGGUGGAAUUAGCUGAUGAUCAUGUAAGAAACUUAGGUCUGGUGACACUUAUUUUGUUUAUCUGCCAGCUUUAGUUUUAAGAGAUGCAAAGGAAGCUUUGCCUCGUGCUUACGGCAGACCUUAUGUAAAUCAUUUGCUAACUACUGUCACGAUGCUAAAUGUAUUUUGAACUGUGGGAAUCCAAAAUAUGUUAGUGUCUCUGCCUGAUUUCAAACCGUCUGGACUCUUGAUAUGCCCUGUUUGAUACUUUUGCAUAUCGAGCGAUUGUCACUUUUUCAGAAAGGUGUGUUUGACUUGUCCCAGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.11%
ME_num:
MEP:
42.48%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.85
Avg Expression:
2.27
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.7646608857854 | 0.0200341306646339 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.23951376775704 | 0.00189829599988325 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.70653294709037 | 0.00882056405727597 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.74554868523751 | 0.00290736545407955 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.8020444407313 | 0.0203657544484605 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.94885099488884 | 0.00261638722902291 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.66727438251389 | 0.000343148311674151 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.22574689274364 | 0.0426687817677748 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.36027469549323 | 0.0480710765117787 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.83432545077252 | 0.00167837815393597 |