Chr:
Chr6
Start:
5353371
End:
5359261
Strand:
+
Ref_name:
OSA-LNCN5630
Sequence
(OSA-LNCN5630.1):
CGAUAUGACACGCCAAAAUUUUACACCUCUAGAUCUAAACACCCCCUAAGAGCGAGUACAAUAGCAGGCUACAAGUCAAUUGUAAGCAUACGUGGAGGAGAGAAGAGAAGAGAGAGAAGGAAAGCAGGCUACAUAUUUGUAGCCAGCUGCAGCACAUACUCCAAUACAUUGUGUGUAUGAGAGGUGAGACUAUAUAUUAGGGCCCCUUUGAAUUACAGAAUGAAAAAGCGGAGGAAUAGGAAAAACAUAGGAUUCUGACAGGAAUGCAAGUGUAAAAUAGAGGAUUACAAAACACAGAAAAAACAUAGGAAUGACUGUUUGAUUGGGCCGCAGGAAAUAAACAGGAAUUCGAGAAGAGAUAAAGACUUAAAGGAUUCUUUCAACGAGGUUCUACCUCAUGUUAAAUUUCCUCCAAAACUUACAUGGGAAAAGACAAUCCAUAUGAAUUUCAUAGGAAUCUAUAGGAUCCAUUCCUUUUAUUCAAAGGGCUAUAUAGGAAAAAAAAUCCUAUAGGAAUGAAAUCCUCUAAAAUUUCUAUGAAUUUCUUUUGAAUCAAAGGGGCCCUUAGUGGUGUAGUAUAUACUUAUAGGUAAACAUUGUAAGAAUGAUUUAUUAGAUUGACUAUAGACAAUUUAGAACCAGUAGUUCACUAUACGGUGAAACUUGCUCUAAGGAAAAAAAGUAUCAAUGGUUUUACGGUCUGAGUGCUUUAUGGAUCAAUGGUCGUCCCAUGGCAUUUUUUGGUUUUCUAAUGGGACGAGGUAGUACCAAAUAAUAAUAUAUGGCAUACUCUUGUGUUUGACAUGCCAUGUUCUUAACCGGCAAGCACGGAAAACGGAACGAUUCAUUAGCACAUGAUUAAUUAAGUAUUAGCUAAUUUUUUUCAAAAAUAGAUUACUUUGAUUUUUUUAAGUAACUUUUGUAUAGAAUUUUUUUUCAAAGCACUAGCAGUUUAAAAAGUGUGCGCGUAAAAAAUGAGGAAGAUGGGAUGGGAAAAAGGUACUCCUAGAGCAUCCCAGCAGAUCUUCUAUCCCACCCUCCAUAUGAGAAAUGGCGUAUGGAAGCAAAAAAAAAAGAGAGGCUCCAGCAAACACUCCAAAACAUCCUCCAAAAAUAGACAUCCGCCAAAUGGCGUUUCUCUCUCCUCACGCCAUCCAGUUCUCCCGCCCCCAUCUGGAUCGAUCCCACCUUCGCCGGCCGCCGUCGCACGUCCCUGUCCUCCCUCUUCACUUGGUAUGGCGGUGGGGUGGCGUGCAACAUCACAGCCGACGUAGCAGGAGAGAAGAGAGAAGAGGAGAAGUAGAAGAGAGAAGAAGUGUUGAGAAAGGAGAGGUAGAAGAGAGAAAUUAAUUUAAAAUAGAUAGCAGUUGAAAGAUAAUUGUAAAAUAUAGGAUGAAGAUGUAAUAUAUAUGAUCUGCUGAAGUAAAGAGAAAUAUGGAGUGAGAAUCUUUUUGAAGGAUCAUCCAAAUAGCAAUAUGGAGGAUGAAAUUUAGACCAUCUGCUGAGAUGCUCUUACACUAGCGGAUUCUAGCAGCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.79%
ME_num:
MEP:
56.91%
HE_num:
HEP:
31.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.70
Avg Expression:
11.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 7.38913847014589 | 1.32142586767254e-27 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 6.2587618080757 | 1.22333427439044e-19 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 7.9815037139635 | 3.16878869134297e-33 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.85684600185572 | 9.09493113136967e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.41293603067842 | 9.03811116604187e-28 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.71115492111952 | 1.72372537652242e-15 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 6.07326231167081 | 1.21818205691823e-18 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.54867528133144 | 0.00221447049872701 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.27970449858854 | 4.44122788721759e-05 |
| 10 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.85633875458512 | 2.94204069916182e-06 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.83938568246644 | 5.76407884228559e-13 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.6209381703293 | 2.26704421840454e-10 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.5272718276505 | 7.03999442861402e-22 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 7.64019737355541 | 2.34581255904263e-30 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.7868383643055 | 2.71637225889649e-20 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.1566231782157 | 0.000106001105643944 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.11015425753652 | 0.000530465163787136 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.0662618015145 | 0.0276923316141237 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.64408760746265 | 2.22717592082382e-05 |
| 20 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.73212878670246 | 4.28323825818835e-15 |
| 21 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.37901290464989 | 0.00588985352740955 |
| 22 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.75186669670515 | 3.11169779124591e-09 |
| 23 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.2372330419403 | 4.63878801116924e-06 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.56476628966613 | 1.71025182164003e-21 |
| 25 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.05526082009231 | 1.05514419068634e-07 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.20528871816205 | 6.55238779211982e-20 |