OSA-LNCN5622


Function Link


Basic Info

Chr:

Chr6

Start:

4838656

End:

4840256

Strand:

-

Ref_name:

OSA-LNCN5622

Sequence
(OSA-LNCN5622.1):

GGCCACCCAGCUAGUUUUCAUAAGAAAAAAACUUCAAUUUAGGUUGCAGAUUAUACAUUUACUAGCGGAAUGAUGUAUUUUACUACAAUACUUAUAAAAACAUAACACAUCAUGCUAGCUUGCCCUCGUCAAUUGGAGCUGGCGCCGCUUGCGGCUAAUAACCCGCUGAAAAUGCAGCCGAUCACUCCGCUGACCGUUCCUCUGACCGCUCCGUUGAUUACUUCGUUGCGAAGAGGACCCUUGGGGCAGACCUUGUGGACAGCGUAUCUGCAGGGAAGGCAUCCGUAGACGAUGUAGCCGGCGAGAAGAAGCCCGCAGUUGUCGAUGUCACAGUAGCAUUUGCUGCAGGUGGAGUUGGUGUAGUCGUAGAUGGACGUCAAACGACCGCACAGCCCGCAGGGAGGGCCGCUGUCUUGGGACUGGGAGGCGGAACCGCCCUGUACACUUGCCGGCGGCACGGGGCAUACCUUGUGGAUCAUGUAUUUGCAGGAAGCGUAAGGGCAGCUGUAGCCGGCCAGAAGGAAAUGGCACUUGUCGCAGGUACAAUCUCGGCUGUUGGAGUUGGUGUGGUCGUAGUUUUCCAUCAUACGGCUGCACUUCCCGCAUUGAGGUGCAUUGUCGUUCGCCAUUUGCACCGACGUGCGUGCUGUCGAUAAUUCUUCAAUCGCACAUUAAUUUGUGAAACGAUCUGGCCUAGUCAUUGCGAACUUUUGCAAAAAGAAACUGAGGGAGAUUUGUUUUUUAGUUAUUUGUCAAGAUUUCAGAUUAUUAACAGUAGAAAAUUGUAGAGUAAACUCAAAUCCUGUACCAAGCAGGCACCAAAGCCAAGUAAUCUAGCUACACCACAGUAUUUCUCAGGAUGCAAAAUUCAAGUGGUGCUUUUGCAAUAGGAAUUUUAUAAGAUUUUCACAGUAAUUGUUUCUAUUCCAUUAAAAACUAUCUAUUCCAAAGGAGAUCUAAAAAUAGAAGAUACGAACUGUAUCAAUUAAAAAUUUGUGGGGGAAGGAAGAUGGACUUUGCACUUGGACGUAGCUACGGCCUACGUGUCACAAGAGCUAGAGCUAGAGAAUUUCAGGAUCUUGUCGGUUUUCCUCAACCCUGCUCAUACACCGUUGCACUCCCCAUAGUCCCACCCAUGCAUAAAACCACUAAAGUACAGCAUAAAGAGAUCUACUGAUUAAUCAAAUUUACAGAAAGCAAUAAGCCCAAGAACAUGUCACCAAAAGGGAUAAACUCCGGUAAGAUUCAGCGGACGACCCGCCAAAGAAAUAGCAAGAGCAGCACGAGAACUCAAUAAAUGCUGGAUCAAUUGCAACACCACGAUCAAAGUGCAGGCGCUACCAAAUUAACUCAAAAUCACAACCAAGAUCAGCAUAUGGGUAGAGGGAAUAGGAUGACAUAAGAAAAAGAAGACAUACCCAAUGGCUAGAGGAAGCAACCAAAUGGUGGGAUUCUCCGAGAUCCAAAGGGCCUAAUAAAUAGGUGCAAAGCCCCGGAGCACUCGUCGGUGGUACUCCCUCUAUUAUAAAAUAUCUACUUCACCCCUGAAGUAUUGGGCCUGGUCUACAUAGCCUCCAGAAAUACGAAACCGGGUAUUCUGC

Sequence
(OSA-LNCN5622.2):

GGCCACCCAGCUAGUUUUCAUAAGAAAAAAACUUCAAUUUAGGUUGCAGAUUAUACAUUUACUAGCGGAAUGAUGUAUUUUACUACAAUACUUAUAAAAACAUAACACAUCAUGCUAGCUUGCCCUCGUCAAUUGGAGCUGGCGCCGCUUGCGGCUAAUAACCCGCUGAAAAUGCAGCCGAUCACUCCGCUGACCGUUCCUCUGACCGCUCCGUUGAUUACUUCGUUGCGAAGAGGACCCUUGGGGCAGACCUUGUGGACAGCGUAUCUGCAGGGAAGGCAUCCGUAGACGAUGUAGCCGGCGAGAAGAAGCCCGCAGUUGUCGAUGUCACAGUAGCAUUUGCUGCAGGUGGAGUUGGUGUAGUCGUAGAUGGACGUCAAACGACCGCACAGCCCGCAGGGAGGGCCGCUGUCUUGGGACUGGGAGGCGGAACCGCCCUGUACACUUGCCGGCGGCACGGGGCAUACCUUGUGGAUCAUGUAUUUGCAGGAAGCGUAAGGGCAGCUGUAGCCGGCCAGAAGGAAAUGGCACUUGUCGCAGGUACAAUCUCGGCUGUUGGAGUUGGUGUGGUCGUAGUUUUCCAUCAUACGGCUGCACUUCCCGCAUUGAGGUGCAUUGUCGUUCGCCAUUUGCACCGACGUGCGUGCUGUCGAUAAUUCUUCAAUCGCACAUUAAUUUGUGAAACGAUCUGGCCUAGUCAUUGCGAACUUUUGCAAAAAGAAACUGAGGGAGAUUUGUUUUUUAGUUAUUUGUCAAGAUUUCAGAUUAUUAACAGUAGAAAAUUGUAGAGUAAACUCAAAUCCUGUACCAAGCAGGCACCAAAGCCAAGUAAUCUAGCUACACCACAGUAUUUCUCAGGAUGCAAAAUUCAAGUGGUGCUUUUGCAACAGUAAUUGUUUCUAUUCCAUUAAAAACUAUCUAUUCCAAAGGAGAUCUAAAAAUAGAAGAUACGAACUGUAUCAAUUAAAAAUUUGUGGGGGAAGGAAGAUGGACUUUGCACUUGGACGUAGCUACGGCCUACGUGUCACAAGAGCUAGAGCUAGAGAAUUUCAGGAUCUUGUCGGUUUUCCUCAACCCUGCUCAUACACCGUUGCACUCCCCAUAGUCCCACCCAUGCAUAAAACCACUAAAGUACAGCAUAAAGAGAUCUACUGAUUAAUCAAAUUUACAGAAAGCAAUAAGCCCAAGAACAUGUCACCAAAAGGGAUAAACUCCGGUAAGAUUCAGCGGACGACCCGCCAAAGAAAUAGCAAGAGCAGCACGAGAACUCAAUAAAUGCUGGAUCAAUUGCAACACCACGAUCAAAGUGCAGGCGCUACCAAAUUAACUCAAAAUCACAACCAAGAUCAGCAUAUGGGUAGAGGGAAUAGGAUGACAUAAGAAAAAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

402

LEP:

81.71%

ME_num:

85

MEP:

17.28%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flower

Tau :

0.92

Avg Expression:

3.80

Tip: OSA-LNCN5622 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA3.062107336305050.00506430578883491
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA2.571904760272670.0453104546863843
3Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"3.892321720608225.49357422569516e-06
4Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"4.74613497370020.0459735816372831