Chr:
Chr6
Start:
4838656
End:
4840256
Strand:
-
Ref_name:
OSA-LNCN5622
Sequence
(OSA-LNCN5622.1):
GGCCACCCAGCUAGUUUUCAUAAGAAAAAAACUUCAAUUUAGGUUGCAGAUUAUACAUUUACUAGCGGAAUGAUGUAUUUUACUACAAUACUUAUAAAAACAUAACACAUCAUGCUAGCUUGCCCUCGUCAAUUGGAGCUGGCGCCGCUUGCGGCUAAUAACCCGCUGAAAAUGCAGCCGAUCACUCCGCUGACCGUUCCUCUGACCGCUCCGUUGAUUACUUCGUUGCGAAGAGGACCCUUGGGGCAGACCUUGUGGACAGCGUAUCUGCAGGGAAGGCAUCCGUAGACGAUGUAGCCGGCGAGAAGAAGCCCGCAGUUGUCGAUGUCACAGUAGCAUUUGCUGCAGGUGGAGUUGGUGUAGUCGUAGAUGGACGUCAAACGACCGCACAGCCCGCAGGGAGGGCCGCUGUCUUGGGACUGGGAGGCGGAACCGCCCUGUACACUUGCCGGCGGCACGGGGCAUACCUUGUGGAUCAUGUAUUUGCAGGAAGCGUAAGGGCAGCUGUAGCCGGCCAGAAGGAAAUGGCACUUGUCGCAGGUACAAUCUCGGCUGUUGGAGUUGGUGUGGUCGUAGUUUUCCAUCAUACGGCUGCACUUCCCGCAUUGAGGUGCAUUGUCGUUCGCCAUUUGCACCGACGUGCGUGCUGUCGAUAAUUCUUCAAUCGCACAUUAAUUUGUGAAACGAUCUGGCCUAGUCAUUGCGAACUUUUGCAAAAAGAAACUGAGGGAGAUUUGUUUUUUAGUUAUUUGUCAAGAUUUCAGAUUAUUAACAGUAGAAAAUUGUAGAGUAAACUCAAAUCCUGUACCAAGCAGGCACCAAAGCCAAGUAAUCUAGCUACACCACAGUAUUUCUCAGGAUGCAAAAUUCAAGUGGUGCUUUUGCAAUAGGAAUUUUAUAAGAUUUUCACAGUAAUUGUUUCUAUUCCAUUAAAAACUAUCUAUUCCAAAGGAGAUCUAAAAAUAGAAGAUACGAACUGUAUCAAUUAAAAAUUUGUGGGGGAAGGAAGAUGGACUUUGCACUUGGACGUAGCUACGGCCUACGUGUCACAAGAGCUAGAGCUAGAGAAUUUCAGGAUCUUGUCGGUUUUCCUCAACCCUGCUCAUACACCGUUGCACUCCCCAUAGUCCCACCCAUGCAUAAAACCACUAAAGUACAGCAUAAAGAGAUCUACUGAUUAAUCAAAUUUACAGAAAGCAAUAAGCCCAAGAACAUGUCACCAAAAGGGAUAAACUCCGGUAAGAUUCAGCGGACGACCCGCCAAAGAAAUAGCAAGAGCAGCACGAGAACUCAAUAAAUGCUGGAUCAAUUGCAACACCACGAUCAAAGUGCAGGCGCUACCAAAUUAACUCAAAAUCACAACCAAGAUCAGCAUAUGGGUAGAGGGAAUAGGAUGACAUAAGAAAAAGAAGACAUACCCAAUGGCUAGAGGAAGCAACCAAAUGGUGGGAUUCUCCGAGAUCCAAAGGGCCUAAUAAAUAGGUGCAAAGCCCCGGAGCACUCGUCGGUGGUACUCCCUCUAUUAUAAAAUAUCUACUUCACCCCUGAAGUAUUGGGCCUGGUCUACAUAGCCUCCAGAAAUACGAAACCGGGUAUUCUGC
Sequence
(OSA-LNCN5622.2):
GGCCACCCAGCUAGUUUUCAUAAGAAAAAAACUUCAAUUUAGGUUGCAGAUUAUACAUUUACUAGCGGAAUGAUGUAUUUUACUACAAUACUUAUAAAAACAUAACACAUCAUGCUAGCUUGCCCUCGUCAAUUGGAGCUGGCGCCGCUUGCGGCUAAUAACCCGCUGAAAAUGCAGCCGAUCACUCCGCUGACCGUUCCUCUGACCGCUCCGUUGAUUACUUCGUUGCGAAGAGGACCCUUGGGGCAGACCUUGUGGACAGCGUAUCUGCAGGGAAGGCAUCCGUAGACGAUGUAGCCGGCGAGAAGAAGCCCGCAGUUGUCGAUGUCACAGUAGCAUUUGCUGCAGGUGGAGUUGGUGUAGUCGUAGAUGGACGUCAAACGACCGCACAGCCCGCAGGGAGGGCCGCUGUCUUGGGACUGGGAGGCGGAACCGCCCUGUACACUUGCCGGCGGCACGGGGCAUACCUUGUGGAUCAUGUAUUUGCAGGAAGCGUAAGGGCAGCUGUAGCCGGCCAGAAGGAAAUGGCACUUGUCGCAGGUACAAUCUCGGCUGUUGGAGUUGGUGUGGUCGUAGUUUUCCAUCAUACGGCUGCACUUCCCGCAUUGAGGUGCAUUGUCGUUCGCCAUUUGCACCGACGUGCGUGCUGUCGAUAAUUCUUCAAUCGCACAUUAAUUUGUGAAACGAUCUGGCCUAGUCAUUGCGAACUUUUGCAAAAAGAAACUGAGGGAGAUUUGUUUUUUAGUUAUUUGUCAAGAUUUCAGAUUAUUAACAGUAGAAAAUUGUAGAGUAAACUCAAAUCCUGUACCAAGCAGGCACCAAAGCCAAGUAAUCUAGCUACACCACAGUAUUUCUCAGGAUGCAAAAUUCAAGUGGUGCUUUUGCAACAGUAAUUGUUUCUAUUCCAUUAAAAACUAUCUAUUCCAAAGGAGAUCUAAAAAUAGAAGAUACGAACUGUAUCAAUUAAAAAUUUGUGGGGGAAGGAAGAUGGACUUUGCACUUGGACGUAGCUACGGCCUACGUGUCACAAGAGCUAGAGCUAGAGAAUUUCAGGAUCUUGUCGGUUUUCCUCAACCCUGCUCAUACACCGUUGCACUCCCCAUAGUCCCACCCAUGCAUAAAACCACUAAAGUACAGCAUAAAGAGAUCUACUGAUUAAUCAAAUUUACAGAAAGCAAUAAGCCCAAGAACAUGUCACCAAAAGGGAUAAACUCCGGUAAGAUUCAGCGGACGACCCGCCAAAGAAAUAGCAAGAGCAGCACGAGAACUCAAUAAAUGCUGGAUCAAUUGCAACACCACGAUCAAAGUGCAGGCGCUACCAAAUUAACUCAAAAUCACAACCAAGAUCAGCAUAUGGGUAGAGGGAAUAGGAUGACAUAAGAAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.71%
ME_num:
MEP:
17.28%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.92
Avg Expression:
3.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.06210733630505 | 0.00506430578883491 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.57190476027267 | 0.0453104546863843 |
3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.89232172060822 | 5.49357422569516e-06 |
4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.7461349737002 | 0.0459735816372831 |