Chr:
Chr6
Start:
4422786
End:
4424187
Strand:
+
Ref_name:
OSA-LNCN5618
Sequence
(OSA-LNCN5618.1):
CUCAUCGUCAUAGUUGACCACUAAUUUCAAAUACGAAACGAGGAAAUCCAACAAAUGUGAGAUUUACUCCUGUCCGGCAGCAUGUACCGGCCAGUAGUACCGGGAGAUACAAGAUCAAAUCUGACUGUCCAUCUUGAAGGGAUACGAUUGGAAAUAGAAAGAGCAAGAGGAGCGGAACGAUUCCGGAGUCGCGCCGCCGCUUUCCUCCUUGCGCUCUUUCUUUUUUCCCUCCCUGAAUCGCUUCUUUCUCAUCUGUUCCUCCCUCCGAGCACAGAAACGGAGCAGUUGCCCCGCCGGCCGAUUUGAUCCCCAUCCAUCUGCCGUCGGCGGCCACGGUACUGGAGAAAACCUCACGGCGCGCUCGCCCCGCAUGCAGUGUCAGGAGCACAAGCAGAUGGAAAGAAGGCGCUCCACUCGCUGGUACCGUGACUUCCUCAAGGAUAUAUGGAUGCUCCUCGGCAAUGGGUUUGGGGCAGAGCUCGGGAAUUCGGUCACUGGGGAGUUCGUUGUUGCUGAGUGGAUGUGGAGCCACAGUCGCGACGGGAACGGGAUGAAGGUGCUCCGUAGCAGUGACGGGAAGAGGAGACGCCGCUGCGAUGGGCCGCCGCGACGACGGGAAGCGGAACCACCGCCGCUGCGAUGGGCAGGGGAGCCGCCGCUGUGAUGGGCCGCCACCGCGACGGGAAGCGGAGCAGCCGCCGCUGCAAUGGGCAGGGGAGACGCCGCCACGACGAGAGCCGGAGCAGCAGCCGCCGCUACGACGGGCAGGGGAGAUGCCGCUGCAAUGAGCCGCCGCCGGGACGGGAAGCGGAGCUGCCGCCGCCGCCGCCGCCCACUGGAUACGGAUCCCGCCGCCGCCGCCCACCGGAUGCAGACCCCACCGCUACCACUGACCGGAAUCGGAUGCAUCCCUACACGAAAAGACAAAAUUACCCAUCCACCCCUCUAUCUAUUCCGGUACCACCUCAUUGGCAAAUUUGUACCUGAGGUACCGGAUAAUUUCCACCGUCCGAUCGAGCUGAAUAAAUGGCUGAGAUUUGGUACCUGGCUAGUACCGUGGUACCUGCUGGAUAGGAGCAAUGCUCAACAAAUGUACCUUGUUCAACGUAGCUAAACCUGGCCAAAUGGGCCGUGCCAAGCCGGGCCGGCCCGAGCACGGUAGUACUGUAGCCGGCCCAGGCCCGGCCCGGCACGCCAGCCUGUGGGCCAUGCCGGCACGGCCCGUUAUCCCGUGCCGUGUUUAGGCCGAUGCCUCAGCCCGUGGGCUGGCACGGCACGGCACGUUUACUGUAGCGUACCGGCACGGCACGGCCCAGGCAUGGCACGGC
Sequence
(OSA-LNCN5618.2):
GGAACGAUUCCGGAGUCGCGCCGCCGCUUUCCUCCUUGCGCUCUUUCUUUUUUCCCUCCCUGAAUCGCUUCUUUCUCAUCUGUUCCUCCCUCCGAGCACAGAAACGGAGCAGUUGCCCCGCCGGCCGAUUUGAUCCCCAUCCAUCUGCCGUCGGCGGCCACGGCAGGAAAGAAGGCGCUCCACUCGCUGGUACCGUGACUUCCUCAAGGAUAUAUGGAUGCUCCUCGGCAAUGGGUUUGGGGCAGAGCUCGGGAAUUCGGUCACUGGGGAGUUCGUUGUUGCUGAGUGGAUGUGGAGCCACAGUCGCGACGGGAACGGGAUGAAGGUGCUCCGUAGCAGUGACGGGAAGAGGAGACGCCGCUGCGAUGGGCCGCCGCGACGACGGGAAGCGGAACCACCGCCGCUGCGAUGGGCAGGGGAGCCGCCGCUGUGAUGGGCCGCCACCGCGACGGGAAGCGGAGCAGCCGCCGCUGCAAUGGGCAGGGGAGACGCCGCCACGACGAGAGCCGGAGCAGCAGCCGCCGCUACGACGGGCAGGGGAGAUGCCGCUGCAAUGAGCCGCCGCCGGGACGGGAAGCGGAGCUGCCGCCGCCGCCGCCGCCCACUGGAUACGGAUCCCGCCGCCGCCGCCCACCGGAUGCAGACCCCACCGCUACCACUGACCGGAAUCGGAUGCAUCCCUACACGAAAAGACAAAAUUACCCAUCCACCCCUCUAUCUAUUCCGGUACCACCUCAUUGGCAAAUUUGUACCUGAGGUACCGGAUAAUUUCCACCGUCCGAUCGAGCUGAAUAAAUGGCUGAGAUUUGGUACCUGGCUAGUACCGUGGUACCUGCUGGAUAGGAGCAAUGCUCAACAAAUGUACCUUGUUCAACGUAGCUAAACCUGGCCAAAUGGGCCGUGCCAAGCCGGGCCGGCCCGAGCACGGUAGUACUGUAGCCGGCCCAGGCCCGGCCCGGCACGCCAGCCUGUGGGCCAUGCCGGCACGGCCCGUUAUCCCGUGCCGUGUUUAGGCCGAUGCCUCAGCCCGUGGGCUGGCACGGCACGGCACGUUUACUGUAGCGUACCGGCACGGCACGGCCCAGGCAUGGCACGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.37%
ME_num:
MEP:
26.02%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
1.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 6.35033035078565 | 6.21099905163846e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 6.41726989089221 | 1.63547448906458e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.68004350780055 | 5.09024976953924e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.22291636445659 | 2.4765186030801e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.67974138189805 | 0.000130092482853374 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 6.04165623260399 | 3.47612504899778e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 6.12992792888631 | 5.34774785184606e-06 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.74077701647885 | 0.0413621791534671 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.11102997794665 | 0.0183066485494314 |
| 10 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 4.07404824750922 | 0.000455998878114378 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 6.56085360143414 | 1.73495481199537e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.6270616343597 | 0.00404514588338142 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.51844277975211 | 0.000108411098215597 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.84002196865006 | 5.50229699609538e-05 |
| 15 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.97709172126792 | 0.00304865521653704 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.3780911816065 | 0.00501564981202185 |