Chr:
Chr6
Start:
3981633
End:
3982580
Strand:
-
Ref_name:
OSA-LNCN5614
Sequence
(OSA-LNCN5614.1):
GCGUUCCUCCUCCUGAGCUCAUACGCUGUCCUCUCUGUUUGUUCCUCGCGCCCCAUCGCAGGUGGCGUGGAGGUGAUCUGGAGCACUGGAGCAGCAACGACGACGAUGGAAGCAGACGGUGGCCAGAGCCAUUGUCGCCGAGGAGGUGGCACCAGCGUCGUGGUGAGAUAUUUGGUGGCCAGGAGGACGGUGAUGGGGAUGGAGGUGCCUAGUCGCGAGUCGACCAUGAUGAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.08%
ME_num:
MEP:
18.9%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.93
Avg Expression:
3.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.77630738996202 | 0.00103905223311155 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.46390537428016 | 0.00223301558350551 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.45859169970965 | 0.0364483185070116 |
| 4 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 3.03406205936048 | 1.02484842245955e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.3997496513948 | 0.00179132628183557 |