Chr:
Chr6
Start:
3661257
End:
3663141
Strand:
+
Ref_name:
OSA-LNCN5608
Sequence
(OSA-LNCN5608.1):
CCCACGGCAGGUGCCGCCCCCCCACCGCGUCCCGCAGCGCCAGCAGCGCCGCGCGGUCGCCCGCCAUGUCGGCCGCCGCCGCCACCGCGCCCGCGACGAGCACCACCACCACCAGCAGCAGAACGGCGCGGCGUCGCCUAACGACGCCAUGGCAAGGCGAGAGCUCGCGAGGAAGGCGGAGGACGCUGUGCUGGGUAAAGGAUUUAUGGGCGGCGAGAGAGCUUAGGAUUCUCCAUUUGGAAGAGCUCGGGUUUUUGUCCAUGCAGCUGGCAUGCACGACGCACCACGGCGGCGGCGUGGUGCCUUCGCCGGAGUUCGCCGCCGCAGUUGAAGUUGGAUGGGGAUUUCAGAAAGGAGAUUGAGAAUCUGGCUGUUUACCAAGUGGUGAUGGAAUGGCUGUCUUUCCGGUCCAGAUUCUAGAGGUAAAGCAGCAUGCAUAAAGUCAAAUGAAAGAUGGGCGUAUGUCAGGGAAUAAUUCGCAGCGUCAUAUCAUGCAAUAUCUAAUCGUCGAUUCGUAACAUGAGUAUGUAUAUUUUCUUUUGAGAGGAUAUUUGUGUAUGUUGAAAUGUUUUUGUUCCUUUGGUACUACAGUGUUUUUAUGGUUCCAAUCCCAGUUGCGGGAAAAAAAAGAGGUGUCGAAC
Sequence
(OSA-LNCN5608.2):
AUGGCAAGGCGAGAGCUCGCGAGGAAGGCGGAGGACGCUGUGCUGGGUAAAGGAUUUAUGGGCGGCGAGAGAGCUUAGGAUUCUCCAUUUGGAAGAGCUCGGGUUUUUGUCCAUGCAGCUGGCAUGCACGACGCACCACGGCGGCGGCGUGGUGCCUUCGCCGGAGUUCGCCGCCGCAGUUGAAGUUGGAUGGGGAUUUCAGUUCAUGAUGUUUGCAGGGUUCCAGGCAGAGCUCGACCUCGUGUGUUGUCUCCCAUUGCUUGGUUCGCUGCGGCUGCUACCCCCGCGCACAGUGCAUGAUGCUCCCUGUCCAAAGCUUUGCUUGAUUGCUUAUGAGCCGUACGCCCGUACCUAAAAUCUAAAUUUUAGAACUUGAUUAAAAGUUAGUUAUAAGAAUUUUCAGAACAGAUUAAUUUUUUAACAGUAUCUUUUAAAUUGCUAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.43%
ME_num:
MEP:
34.35%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.90
Avg Expression:
2.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.33117926901936 | 1.50618908812885e-06 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -3.05269454272144 | 0.0216887837415641 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.11563869573476 | 6.61236595419831e-08 |
| 4 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.96938454649053 | 0.0219581422182674 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.81513511624201 | 0.047346470724263 |