Chr:
Chr6
Start:
3433698
End:
3439116
Strand:
-
Ref_name:
OSA-LNCN5605
Sequence
(OSA-LNCN5605.1):
CUUUCGAACACAGAAGGGGGAGAGAAAGAGGGGGAAAUCAAGAAGCAGAGAGAGAAGGGAAGGCGUCCGCGCUCGCAAUCCCCACCUUCUCCAUGCCGCGCCCCGCCUCGCCUCGCCGACCACCGGCGCCACCUCCUCCUCCUCCACGCCGCGCUCCGCCUCGCUGACCACCGGAUCCACCGCCGCCUCCUCCUCCUCCAUGCCACGCUCAGACUCACUUACCACCGGCGCCACCUCCUCCUCCAAGCUGUGGGCGCCCCCGACAAUCACCCACGAGAACGCCUCCCCCUCCUGCUCCGCCACGCGGGCACCACUCCGGCCACCGGCAGCUGCCUCCUCCUCCUCCUCCAAGCUGCGCAGUUGCACCUGCCGGAUUGAUAAGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGAAUUCAACACAGGAAGAAUAAAACAUGAGGUAAGAGCAAGAGCUGGGCUUGUGUACGUCAUGGACUCAUGGUCCCGUACUCAGCUCACUGAUGUAGUCGCCGGCAUCAGCGAGAAACAACGUCCGGUUGAAGAGCUCACCAACGAUCUCCUGGCGGCCAUAGACGCCGGCGAGCCGGUCUCCG
Sequence
(OSA-LNCN5605.2):
CUUUCGAACACAGAAGGGGGAGAGAAAGAGGGGGAAAUCAAGAAGCAGAGAGAGAAGGGAAGGCGUCCGCGCUCGCAAUCCCCACCUUCUCCAUGCCGCGCCCCGCCUCGCCUCGCCGACCACCGGCGCCACCUCCUCCUCCUCCACGCCGCGCUCCGCCUCGCUGACCACCGGAUCCACCGCCGCCUCCUCCUCCUCCAUGCCACGCUCAGACUCACUUACCACCGGCGCCACCUCCUCCUCCAAGCUGUGGGCGCCCCCGACAAUCACCCACGAGAACGCCUCCCCCUCCUGCUCCGCCACGCGGGCACCACUCCGGCCACCGGCAGCUGCCUCCUCCUCCUCCUCCAAGCUGCGCAGUUGCACCUGCCGGAUUGAUAAGAGGGGCUUUCUCCUCAAGAUCGACGAUGCCCAAGCGGCUUGAUCCAGAGCUCGUGCACUCUUUAUAUCUCAACUGCAAGAAGGAUCAGUUAGUUAUCUACAUUGAUGGUUUUCUAUGAUUCAGAAGACAGGGCGUGCCAUGCGAUCCGCCGCUCGGCGAUGCUGCACCUGCCGAGCUGCGUGCUCUUCUGGCGAGAGGAGACCACCAACGCCGGGCGGAAAUUGUUUGGCAACUCGUGCAAGAUUCCAGAAGACAGGUCGUGCCAUGCGAUCCGCCGCUCGGCAAUGCUGCACCUGCCGAGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGAAUUCAACACAGGAAGAAUAAAACAUGAGGUAAGAGCAAGAGCUGGGCUUGUGUACGUCAUGGACUCAUGGUCCCGUACUCAGCUCACUGAUGUAGUCGCCGGCAUCAGCGAGAAACAACGUCCGGUUGAAGAGCUC
Sequence
(OSA-LNCN5605.3):
CUUUCGAACACAGAAGGGGGAGAGAAAGAGGGGGAAAUCAAGAAGCAGAGAGAGAAGGGAAGGCGUCCGCGCUCGCAAUCCCCACCUUCUCCAUGCCGCGCCCCGCCUCGCCUCGCCGACCACCGGCGCCACCUCCUCCUCCUCCACGCCGCGCUCCGCCUCGCUGACCACCGGAUCCACCGCCGCCUCCUCCUCCUCCAUGCCACGCUCAGACUCACUUACCACCGGCGCCACCUCCUCCUCCAAGCUGUGGGCGCCCCCGACAAUCACCCACGAGAACGCCUCCCCCUCCUGCUCCGCCACGCGGGCACCACUCCGGCCACCGGCAGCUGCCUCCUCCUCCUCCUCCAAGCUGCGCAGUUGCACCUGCCGGAUUGAUAAGAGGGGCUUUCUCCUCAAGAUCGACGAUGCCCAAGCGGCUUGAUCCAGAGCUCGUGCACUCUUUAUAUCUCAACUGCAAGAAGGAUCAGUUAGUUAUCUACAUUGAUGGUUUUCUAUGAUUCAGAAGACAGGGCGUGCCAUGCGAUCCGCCGCUCGGCGAUGCUGCACCUGCCGAGCUGCGUGCUCUUCUGGUAGAUCCGUUGAAACUGUGAUUCUGAGUUCUAAUUCUUGUACAUUCGAAUCUCUUUAAGUCCAUUGAAUCGAUUGGUUUUGAGGCGAGAGGAGACCACCAACGCCGGGCGGAAAUUGUUUGGCAACUCGUGCAAGAUUCCAGGUCUGCAAUGAUGCAGCGAUUCUUUCUUCUUUCUUAUAUCUCAACUGCGAGAAGGAUCAGUUGGUGAUCUACGUUGAUGGUUUUCUUGAUGAUUCAGAAGACAGGUCGUGCCAUGCGAUCCGCCGCUCGGCAAUGCUGCACCUGCCGAGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGUUUAGCGUUUGAGCACAUCAAAUUAUUUGGCUAUAAAAAUUACAGACUUUUGAUAUUGGCUUAAUUGAUGAGGGUGAUUAUUAUAUUAAGUUUCAUCUUUGUAAUAAGAUUGAUAAGUUUAAAUGGGCUUUAGUUUUGGUGUACGGGCCAGCACAAAAUGAAUUUAAGGAACACUUUCUUUCUUUUCUGAGUUAGUUUAUAUGUGCAGUCAUAAAACCUUACCAAUUAUCAUUGGUAGUGAUUUUAAUAUUUUAUGUAGUCCUAUGAAAAAGAAUAAUGACAAUUUUGAUAAUAGAUAGCCC
Sequence
(OSA-LNCN5605.4):
CCUCCAAGCUGCGCAGUUGCACCUGCCGGAUUGAUAAGGGCGUGCCAUGCGAUCCGCCGCUCGGCGAUGCUGCACCUGCCGAGCUGCGUGCUCUUCUGGUAGAUCCGUUGAAACUGUGAUUCUGAGUUCUAAUUCUUGUACAUUCGAAUCUCUUUAAGUCCAUUGAAUCGAUUGGUUUUGAGGCGAGAGGAGACCACCAACGCCGGGCGGAAAUUGUUUGGCAACUCGUGCAAGAUUCCAGGUCUGCAAUGAUGCAGCGAUUCUUUCUUCUUUCUUAUAUCUCAACUGCGAGAAGGAUCAGUUGGUGAUCUACGUUGAUGGUUUUCUUGAUGAUUCAGAAGACAGGUCGUGCCAUGCGAUCCGCCGCUCGGCAAUGCUGCACCUGCCGAGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGUUUAGCGUUUGAGCACAUCAAAUUAUUUGGCUAUAAAAAUUACAGACUUUUGAUAUUGGCUUAAUUGAUGAGGGUGAUUAUUAUAUUAAGUUUCAUCUUUGUAAUAAGAUUGAUAAGUUUAAAUGGGCUUUAGUUUUGGUGUACGGGCCAGCACAAAAUGAAUUUAAGGAACACUUUCUUUCUUUUCUGAGUUAGUUUAUAUGUGCAGUCAUAAAACCUUACCAAUUAUCAUUGGUAGUGAUUUUAAUAUUUUAUGUAGUCCUAUGAAAAAGAAUA
Sequence
(OSA-LNCN5605.5):
CCUCCAAGCUGCGCAGUUGCACCUGCCGGAUUGAUAAGAGGGGCUUUCUCCUCAAGAUCGACGAUGCCCAAGCGGCUUGAUCCAGAGCUCGUGCACUCUUUAUAUCUCAACUGCAAGAAGGAUCAGUUAGUUAUCUACAUUGAUGGUUUUCUAUGAUUCAGAAGACAGGGCGUGCCAUGCGAUCCGCCGCUCGGCGAUGCUGCACCUGCCGAGCUGCGUGCUCUUCUGGCGAGAGGAGACCACCAACGCCGGGCGGAAAUUGUUUGGCAACUCGUGCAAGAUUCCAGGUCUGCAAUGAUGCAGCGAUUCUUUCUUCUUUCUUAUAUCUCAACUGCGAGAAGGAUCAGUUGGUGAUCUACGUUGAUGGUUUUCUUGAUGAUUCAGAAGACAGGUCGUGCCAUGCGAUCCGCCGCUCGGCAAUGCUGCACCUGCCGAGGUGCCUUCUGAUAGAUCCAUUGAAACUGUUGAUUCUGAGUUCUAAUUCUUGCACAUUCGAAUCUCUUCAGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGUUUAGCGUUUGAGCACAUCAAAUUAUUUGGCUAUAAAAAUUACAGACUUUUGAUAUUGGCUUAAUUGAUGAGGGUGAUUAUUAUAUUAAGUUUCAUCUUUGUAAUAAGAUUGAUAAGUUUAAAUGGGCUUUAGUUUUGGUGUACGGGCCAGCACAAAAUGAAUUUAAGGAACACUUUCUUUCUUUUCUGAGUUAGUUUAUAUGUGCAGUCAUAAAACCUUACCAAUUAUCAUUGGUAGUGAUUUUAAUAUUUUAUGUAGUCCUAUGAAAAAG
Sequence
(OSA-LNCN5605.6):
CUUUCGAACACAGAAGGGGGAGAGAAAGAGGGGGAAAUCAAGAAGCAGAGAGAGAAGGGAAGGCGUCCGCGCUCGCAAUCCCCACCUUCUCCAUGCCGCGCCCCGCCUCGCCUCGCCGACCACCGGCGCCACCUCCUCCUCCUCCACGCCGCGCUCCGCCUCGCUGACCACCGGAUCCACCGCCGCCUCCUCCUCCUCCAUGCCACGCUCAGACUCACUUACCACCGGCGCCACCUCCUCCUCCAAGCUGUGGGCGCCCCCGACAAUCACCCACGAGAACGCCUCCCCCUCCUGCUCCGCCACGCGGGCACCACUCCGGCCACCGGCAGCUGCCUCCUCCUCCUCCUCCAAGCUGCGCAGUUGCACCUGCCGGAUUGAUAAGACAGGGCGUGCCAUGCGAUCCGCCGCUCGGCGAUGCUGCACCUGCCGAGCUGCGUGCUCUUCUGGUAGAUCCGUUGAAACUGUGAUUCUGAGUUCUAAUUCUUGUACAUUCGAAUCUCUUUAAGUCCAUUGAAUCGAUUGGUUUUGAGGCGAGAGGAGACCACCAACGCCGGGCGGAAAUUGUUUGGCAACUCGUGCAAGAUUCCAGACAGGUCGUGCCAUGCGAUCCGCCGCUCGGCAAUGCUGCACCUGCCGAGGUGCCUUCUGAUAGAUCCAUUGAAACUGUUGAUUCUGAGUUCUAAUUCUUGCACAUUCGAAUCUCUUCAGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGUUUAGCGUUUGAGCACAUCAAAUUAUUUGGCUAUAAAAAUUACAGACUUUUGAUAUUGGCUUAAUUGAUGAGGGUGAUUAUUAUAUUAAGUUUCAUCUUUGUAAUAAGAUUGAUAAGUUUAAAUGGGCUUUAGUUUUGGUGUACGGGCCAGCACAAAAUGAAUUUAAGGAACACUUUCUUUCUUUUCUGAGUUAGUUUAUAUGUGCAGUCAUAAAACCUUACCAAUUAUCAUUGGUAGUGAUUUUAAUAUUUUAUGUAGUCCUAUGAAAAA
Sequence
(OSA-LNCN5605.7):
CUUUCGAACACAGAAGGGGGAGAGAAAGAGGGGGAAAUCAAGAAGCAGAGAGAGAAGGGAAGGCGUCCGCGCUCGCAAUCCCCACCUUCUCCAUGCCGCGCCCCGCCUCGCCUCGCCGACCACCGGCGCCACCUCCUCCUCCUCCACGCCGCGCUCCGCCUCGCUGACCACCGGAUCCACCGCCGCCUCCUCCUCCUCCAUGCCACGCUCAGACUCACUUACCACCGGCGCCACCUCCUCCUCCAAGCUGUGGGCGCCCCCGACAAUCACCCACGAGAACGCCUCCCCCUCCUGCUCCGCCACGCGGGCACCACUCCGGCCACCGGCAGCUGCCUCCUCCUCCUCCUCCAAGCUGCGCAGUUGCACCUGCCGGAUUGAUAAGAGGGGCUUUCUCCUCAAGAUCGACGAUGCCCAAGCGGCUUGAUCCAGAGCUCGUGCACUCUUUAUAUCUCAACUGCAAGAAGGAUCAGUUAGUUAUCUACAUUGAUGGUUUUCUAUGAUUCAGAAGACAGGGCGUGCCAUGCGAUCCGCCGCUCGGCGAUGCUGCACCUGCCGAGCUGCGUGCUCUUCUGGUAGAUCCGUUGAAACUGUGAUUCUGAGUUCUAAUUCUUGUACAUUCGAAUCUCUUUAAGUCCAUUGAAUCGAUUGGUUUUGAGGCGAGAGGAGACCACCAACGCCGGGCGGAAAUUGUUUGGCAACUCGUGCAAGAUUCCAGGUCUGCAAUGAUGCAGCGAUUCUUUCUUCUUUCUUAUAUCUCAACUGCGAGAAGGAUCAGUUGGUGAUCUACGUUGAUGGUUUUCUUGAUGAUUCAGAAGACAGGUCGUGCCAUGCGAUCCGCCGCUCGGCAAUGCUGCACCUGCCGAGGUGCCUUCUGAUAGAUCCAUUGAAACUGUUGAUUCUGAGUUCUAAUUCUUGCACAUUCGAAUCUCUUCAGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGUUUAGCGUUUGAGCACAUCAAAUUAUUUGGCUAUAAAAAUUACAGACUUUUGAUAUUGGCUUAAUUGAUGAGGGUGAUUAUUAUAUUAAGUUUCAUCUUUGUAAUAAGAUUGAUAAGUUUAAAUGGGCUUUAGUUUUGGUGUACGGGCCAGCACAAAAUGAAUUUAAGGAACACUUUCUUUCUUUUCUGAGUUAGUUUAUAUGUGCAGUCAUAAAACCUUACCAAUUAUCAUUGGUAGUGAUUUUAAUAUUUU
Sequence
(OSA-LNCN5605.8):
AGGGGCUUUCUCCUCAAGAUCGACGAUGCCCAAGCGGCUUGAUCCAGAGCUCGUGCACUCUUUAUAUCUCAACUGCAAGAAGGAUCAGUUAGUUAUCUACAUUGAUGGUUUUCUAUGAUUCAGAAGACAGGGCGUGCCAUGCGAUCCGCCGCUCGGCGAUGCUGCACCUGCCGAGCUGCGUGCUCUUCUGACCACCAACGCCGGGCGGAAAUUGUUUGGCAACUCGUGCAAGAUUCCAGGUCUGCAAUGAUGCAGCGAUUCUUUCUUCUUUCUUAUAUCUCAACUGCGAGAAGGAUCAGUUGGUGAUCUACGUUGAUGGUUUUCUUGAUGAUUCAGAAGACAGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGUUUAGCGUUUGAGCACAUCAAAUUAUUUGGCUAUAAAAAUUACAGACUUUUGAUAUUGGCUUAAUUGAUGAGGGUGAUUAUUAUAUUAAGUUUCAUCUUUGUAAUAAGAUUGAUAAGUUUAAAUGGGCUUUAGUUUUGGUGUACGGGCCAGCACAAAAUGAAUUUAAGGAACACUUUCUUUCUUUUCUGAGUUAGU
Sequence
(OSA-LNCN5605.9):
CUUUCGAACACAGAAGGGGGAGAGAAAGAGGGGGAAAUCAAGAAGCAGAGAGAGAAGGGAAGGCGUCCGCGCUCGCAAUCCCCACCUUCUCCAUGCCGCGCCCCGCCUCGCCUCGCCGACCACCGGCGCCACCUCCUCCUCCUCCACGCCGCGCUCCGCCUCGCUGACCACCGGAUCCACCGCCGCCUCCUCCUCCUCCAUGCCACGCUCAGACUCACUUACCACCGGCGCCACCUCCUCCUCCAAGCUGUGGGCGCCCCCGACAAUCACCCACGAGAACGCCUCCCCCUCCUGCUCCGCCACGCGGGCACCACUCCGGCCACCGGCAGCUGCCUCCUCCUCCUCCUCCAAGCUGCGCAGUUGCACCUGCCGGAUUGAUAAGAAGACAGGGCGUGCCAUGCGAUCCGCCGCUCGGCGAUGCUGCACCUGCCGAGCUGCGUGCUCUUCUGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGUUUAGCGUUUGAGCACAUCAAAUUAUUUGGCUAUAAAAAUUACAGACUUUUGAUAUUGGCUUAAUUGAUGAGGGUGAUUAUUAUAUUAAGUUUCAUCUUUGUAAUAAGAUUGAUAAGUUUAAAUGGGCUUUAGUUUUGGUGUACGGGCCAGCACAAAAUGAAUUUAAGGAACACUUUCUUU
Sequence
(OSA-LNCN5605.10):
AACGCCGGGCGGAAAUUGUUUGGCAACUCGUGCAAGAUUCCAGACAGGUCGUGCCAUGCGAUCCGCCGCUCGGCAAUGCUGCACCUGCCGAGGUCCAUUGAAUCGGUAGGUUUUGAGGCGAGAGGAUCCCACCAACGCCGGGCAGAAAUUGUUCGGCAACUCACGCGAGAUUCCAGAUUUGUUGCGCCUCAGGCAGCUGCUGAUCUGACCAGCGGUGCUUCAAGUAAAGGUUUAGCGUUUGAGCACAUCAAAUUAUUUGGCUAUAAAAAUUACAGACUUUUGAUAUUGGCUUAAUUGAUGAGGGUGAUUAUUAUAUUAAGUUUCAUCUUUGUAAUAAGAUUGAUAAGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.5%
ME_num:
MEP:
25.0%
HE_num:
HEP:
6.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.82
Avg Expression:
4.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.60108816662235 | 8.61024654979231e-10 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 4.85821177849958 | 0.00993727146481492 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.44145408852866 | 5.80055145640825e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.20406520561945 | 3.14694578066678e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.97265192786333 | 4.9398794436115e-05 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 5.93018764748358 | 0.00283312040008086 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 4.1703139381543 | 0.0462579212882848 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.87204744166702 | 1.43156510398551e-05 |