Chr:
Chr6
Start:
3355011
End:
3357497
Strand:
+
Ref_name:
OSA-LNCN5602
Sequence
(OSA-LNCN5602.1):
GACCACGCCGUUGUUGCGUCGCUGCGCCGCCUCGUCGCCGGCCCACCGCCAGCGACCGGCACCGCGCCGCGCCGCCGCCUACAGCCUUCUCCGUGCCCCCUCCUCUGCACUCUCCUCCAGUAGCUCCAGACUCCUCCACGAGGCGUCGCGCCGCUGCCUCUGAUCAAUCCUGCAUCACGCCGCUGCCUCUGAUCAUUCCUGCAUCACCUCCGACGAAGACGACGUUGAGGACUUGAGGUAAAUCCUGCAUCAUCUACUAUGUGAACAAUGUUAUCUAAUGUCUACCAUCUAUUUGAAGAACUAUGUUAUUUUCAUGAUUUCAUCUACUGUGUAGUCUUGCACUUAUUUAUGCAUGCCUCUUCAAUAAAUGGUGACUUGGUGAGAUGCUGUGAGCCUGUGAAUCUGUCGUACUGAGAUAUCAUAUAUAUGAUGAUUGGUGCAUUGGUGGUUUGAUGCUGUUUGCUUCCUAUUUUUUCAGUCCAUAUCCCACACUCAAUUUUUUUUUGUAUUUUUUAAUUAUUAUAUAUAUAUAUAUAUAUUCGCGUAUCCCCGUAUCCAUAUUUUUGGGAAGAUGGUGUAUCCCGGUAUCGCCGUAUCACGUAUCCGUAUCCGUAUCAACGUAUCGGGGUAACGUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.91%
ME_num:
MEP:
16.67%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
1.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.97674243661402 | 0.0267326018985786 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.68576461445139 | 0.01323447890611 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.83728137296474 | 0.00993690984087642 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.09342919862962 | 0.044634149757078 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.25943742598736 | 0.0365795354030721 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.22592866561158 | 0.00805945508206185 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | 1.72611644242882 | 0.000397111467586666 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.648551576715 | 0.0115337872630427 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.12277104283308 | 0.00505046402070482 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.01296070343795 | 0.0119542627200746 |
| 11 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.2117435322057 | 7.21458132156591e-07 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.33797422322787 | 0.00165055962488448 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.2558524446619 | 0.0027905229199256 |