Chr:
Chr6
Start:
2418697
End:
2422382
Strand:
+
Ref_name:
OSA-LNCN5587
Sequence
(OSA-LNCN5587.1):
CCGUAAAUGGUGGACCACCUCGCCGUCGCCGGCCGUCUCCCUCCUCCUCCGCCGCGUCCCAUCUCUCCCUCCGCCACCGCCAUCGCCAUCGCCGCAGUCUCGCAGUUUAACAAAUGAUGGUGGACAUCAGAUAGUCCCUUGUCCUGGUGAAUAUAGGAUCUUUGACUUAACCAAGACAAGUUGUCUUAUCUUGUGGCUGCACUUUGCUUAUUGCUUAUUGUAUGAGAGGCAGAAGUUGGGGCAGGCUUUAACCCUGCGGCACCCACAAGGGGAAAACAGAAAUGGCAAUACAUCAUUUGCAUUUUCUGUUAUUUCUAUACUCUUGUCAGGCACAACUAAAUAUGCUAAAUAUGGUUUCAGUUGACCAACCACUGUAAGAAGUUUCUGCAGGAGGAUGUGUAAGGUACCCAAUUAGGCAAAUCUGUUGUUUGGAACUUCAGCUGGGUGCCUGCCAGUUGCUGCCAUUGGAAAAUUUUCCCUGGUAGGCCGAAGUAGCUAUGGUGCUGAUGAUGAGGGCAUGACUUCAGAGGAAACUGGUCGAAAAGAAAAUCUGAUUGCACGUGCAUAUUCAGUCAACUAUCUCAUGUUCAGCAUGAUGGAGGCAGUUACGAGUUUCAGAACUCAUGACCUAUCUGUUGUACAUUUGUUGACAUUUGCAUUAAACAAUACCGUAUGAAGUUAGUACCAUUUAAAUCAAGCAGAGACAGAAACCCAAAUUGGAUCUGAAAAGGAGUCCAUGUUGGGUGGUAGGGGGUGACCCACCCCUUUCAACCCAAAUGAUAUGAGCCUACUUCAAAUUAAGUAAAAGGUACUUUACCGGAGUCCUGUUUAUCCAAUUGUUACGUUUACGCAAAAGCGUUGAAUUUAUAUGUUUCUAAACUGUGUCUAUGUCCUAGUCAGCCAGAAACCAGCAGUUAGAUAUUCCCCUUUAUUUUACCAGCUACAGGAUAGGUGUUCUUUGGUCAUAUUUGCUCGUCUACUUUACUCAUGUCCAUGAUCAACUGUUUGUAUGAGAUAAUCCUAUUUAAAGGGCAACUUGAUUAACUUGGACAAGAUCCAUAGCUACGUUUUGUUUCUAAAUAAUGAACUGACUUAUUGCUCUCCAUUUUUUUUUUCUGUCAACAUGGUUGUGCUCUAUUGGUUUGCAGUUGCAGCCAAACUAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.98%
ME_num:
MEP:
55.08%
HE_num:
HEP:
8.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.70
Avg Expression:
4.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.38980663498981 | 0.0188273013371688 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.37434857863963 | 0.0179158636428096 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.59542011688067 | 0.00966876075330064 |
4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.1356907767724 | 0.029473867827563 |
5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.06544803232297 | 0.0449856625056274 |