Chr:
Chr6
Start:
1928193
End:
1929842
Strand:
-
Ref_name:
OSA-LNCN5579
Sequence
(OSA-LNCN5579.1):
AGUGACAAGGGAUGAUCUGACUACAGUUCUAAUGGAAAUAUACAAUACACUGACAAAGUUCAAGCCCUUGAAAUUUGCACUUUUGUGAUACAGCCAUAUCUCGCUAUAGUGCUGAUACUCUGACACCAGCAUGUUCACAUCUGUUCCAUUAAUAGCGCAUGCUGUUUACAUCCGAUAUUGAACAUGAUAACAUAUAUGUUGAUUGGUUGGAAUUAAAGAUUUGCAUUCCUGGAUAAUCAAAUAAUAGUUAACAACAAAAGUUGAGCAAUAUGCUGCCUUCUAAAACCAUAUUUACCCAUUACCUUCUAAGUGAUUCUAACUUCUAAGACCUCAAUUCAAAACCAACCUAAAAUCAGGCAAGAAUCUUUAACCAUGAUGUCACAUACUACACCAAUAUGCUUACAGGAAAAUUACAAUAUUUAGUUUCUCAGUAGCUCCCUGACAUGGUUAAAUCUGACUGUAUGCUAUUAGAUCCACCCUAGUUCUCUCAGUCCCAUGUUGUUGUUUUUUAUCACGAACACACCAAUAACAGUCAAAUUUCGUGAUUUCAUCACUACAUCAUCAACCACAAGCAACACCAUAGCAUGGAAAACAUGCAACGAACAUGGGUCCGGGUGGGUGGGAAGGAAUUAAUUCAUCUGGGACAAACAUUAAACAGCACGAGACUGAAUAAUCUCACCAUACUAGUACAUGGGGUCCCAAGCAUCAAUAUACAGGUCGUCUAAGAAUUUAGCAUAGCAUCUGCUUUGUAAAUUCCCUCUUCUUCUUUGUUUUUUUUUUUUGUAAAUAACUUUCUUUUAUCUAAUCUAAUAUAUAUAGCACAGUAGGAGCCUCUGCCUCUCCUGCUGUUUUUCGUCAAAGAGGAAAAGGGUUGGCUAAGAAAAGAUAUUCACAAAGUUAGGAAGGGUAUAUAGAUUGUGCUUUCUAUAGGACUAUGAAAUAUGAUGGUUUUGCAGAUGUUUGUAGGAACUACUUUUCAGUUUUCAGAACUUAGUGCUUCCUGAAUGCAGAUAAGAAAAUACAGUAAGAUAUUAGAAGGAUGUCUAGUAAGUUACACUAAUAAAGAUCCAGACGUGUGCAGUAUUAAGGUAUAUCAAAAGUCAGAAAUCAGGGCAAUGCAAAAGUAGGUCAUAUACCAUAUUAUGUGUAAAGUACAAAACUUGUUUUCUGAAGGAGACCAAGAACUUCACUGACCAUUUUAAUCUAAAAUUUUCUGAACAAACAGCCUAAACAGCUUUAUAAAAGGUAUCUCAACCUUGAACACCCAUUUCCAUUUUCAAAUUAUUGUUUUGGUUCUCACAUAAUAGACAUGAAUGACUGUACCAUUUCUAACUUUCAGUUCAUCUGUUUAUACUAGUCAUGGCAAAAUAAUAACUUAGGACAAAGAAGACAGCAGUCCCGGACUUUUCAUUUGGUCCAUUUUGCACUAUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.88%
ME_num:
MEP:
85.77%
HE_num:
HEP:
9.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.78
Avg Expression:
10.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.15224095956013 | 0.00124427285567159 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.37718816769596 | 1.53349934253127e-05 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.07751411737164 | 1.37169801853781e-05 |