Chr:
Chr6
Start:
1787241
End:
1788228
Strand:
-
Ref_name:
OSA-LNCN5576
Sequence
(OSA-LNCN5576.1):
UUCAUAUAUCCGAUGUGACACGCCAAAAAUUCUCGUUCCCGAACUAAAUAGGCCCCAGGUGCUCUCGUCUACUACUCACUGCUCUACAUUGAGGCUGUGUUUAGAUCCAAAGUUUGAUCUAAACUUCAGUCCUUUUCCAUCACAUCAACCUGUCAUACACACACAACUUUUCAGUCACACCAUCUCUAAUUUCAAUCAAAAUCUAAACUUUGCGCUGAACUAUAAACACAGCCUGAUUUUAAAAGAGGCCCCGGUUUUGUUGCAGGAAAAAUUGUUGUCUACUCCACAAAGCGUGCUCAUGUCUACACCGAUGUGCAACAAAGAUGAUGUACAUACACUAGAGUAUACGAGUGGGUGGUAUGGCUUUUGGUAUCAUCGGCCAGCGGUUUUGAGCAAAUUAUGAAUGCCCAUAUGUUUGUUGUUUCCAGAUACACUGUCUCUUUCCCGUAGGAGUAUCAACUGGGUCCAGUUAAGUAGCUUUUCGCGCUGAAUUGGUUUGUAAUUUUGGGGGGAGGGGGGGGGGGGGGGAUUUGAAGGAGGAGUAGCAAGUGAUUGGCCUUUUGAGAUACAUGAAAGAACUGGCCCUCCUGUGUAAGAGGAGGUACCACUCUACUAUACUCCACUCUAGGAGUAGUCUCAAGUCUCAACUACUUACUCAGGCUUCAUUCGCCAUCUCUAAAGAAAAAAAAGUCAAGUUGCGCUUAAGAUGGAUUUCAGGUAGUAGUAGUAGUACCAUUUCAGCAAUCUCUCCGCUUCAAAUCUUGCCCCGGUCGAGCUUGAGGCAGGGUUCGAAUUACCGCCGGUAACCGUGUGGUUACCGGGCUUACCAUGGGGGUACGGUAAUAUAAAUACCACGAUAACCUCCUUAAAUUCAAAUAAAUUUUAAAAAUAAUUUGAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.33%
ME_num:
MEP:
4.47%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.84597692745694 | 0.000219954636305651 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.94754301948148 | 0.000115784940639197 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.23079223692454 | 0.00210586860657976 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.0938344530276 | 0.00343471271919506 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.38216254588691 | 0.00617192119269796 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.66511455261418 | 0.0140827347842337 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.20564165710457 | 4.6610114755262e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.98301503071788 | 0.00704112745294296 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.1868042223368 | 0.00221648523393457 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.38628439638169 | 2.51283636170209e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.80244403920897 | 0.000245526383753742 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.52513980040857 | 1.03463847336571e-05 |