Chr:
Chr6
Start:
1722207
End:
1724518
Strand:
-
Ref_name:
OSA-LNCN5574
Sequence
(OSA-LNCN5574.1):
CUUGUCAAUAAUUCAUCUGACUGCUAUCUUGCAAGAGGCAGGCUCUAUGGCCGCUGCACUUGGGGCAGGAAGUUCCAGGCUACACCUGAACAGAAAGCUUCAUCCCCCAGAGUGGGCGUUUGGUGAGAUUAGGCUGGAAAGAAGUUGGAAAUAGCCAGGCAGAGGCAAGGAAUGACCGGUUCAGCCUAUUGAUCGUUGCUUCUUUCUAUGGAUCAGGCCAAGCUCAAUUGCUAGCUUCUCCCCAUAACGGCAGGUCUCUGCAGCUUUGGGGGCACACGGCACAAGAAGAACAUGAACUGAUCGAUGAGUAUGACAUAUGCACGGCCCGGCCAUGAUAUUUAUGCUAUAGAAGGAAGGAAAUUGAAAGCAGAGCAACAGCAGCAGCAACUCCCGGAUGGAUCGACGAUCGACGUACGUCGCCGUUGCCGACUUGUAGUGUACGCAUUAAUCACAAAUUCACAACACGUACUACAAGAUUAUACUAUAUUUAAUCAUGUAUUUGGUGUCUAUCUCUAGCUACAGAUAGAUUUUAGAUCACUACUGACUCAACUGAAAUGAUGAACACUAGACACUUGCACUAAGCAGUUGAGAUUCCCCAUAUUCCAAACGCCACCAAGAAAUACUCGGAAAAGAGAGGACAAUUGACCCAACUUGGUCGACACAUGUAGCCAUGCAGCUCGUCGUCUCUCUCUUUCGCUUCUUUUUUUGUUUCUUUCUCCUCCUGCCCCUUUGCUUCGAUGGAGUAGAACACCACCACUACAUCUUGCUGCUCAUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
76.63%
ME_num:
MEP:
22.36%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.89
Avg Expression:
2.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.32244864283109 | 6.24482192417367e-18 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.99731394824787 | 8.81541539853629e-09 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.85241750638956 | 3.01072274907376e-05 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.74150120722083 | 1.85677095687761e-05 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.15512346944855 | 4.04603797983741e-07 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.42152066693915 | 4.50919763909746e-06 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.86373939393175 | 1.26689481889061e-12 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.26698422047321 | 0.000165094353962935 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.3214974103057 | 0.000180828325464808 |