Chr:
Chr6
Start:
1628499
End:
1631527
Strand:
-
Ref_name:
OSA-LNCN5572
Sequence
(OSA-LNCN5572.1):
AUUUACAAGCUAAUACAGAAAAUAAGCAAAAAGAUAAAGUAAACCCGCAUGAUGUUAAGGUCCAACAGCAGACAUGACAAAUUUGCCAGCUUCAGUAUGAUAACUGGUGAUUAUCAGCAUGCCAUUCAACAAUGAACUGUGAAGCGAGACCAUUCUAGCAGGUAUGAUAUAAUAUGAAAUUUUAUUCAAAUUCACGCGGAUUUACAGCAGCGUAAUACAGAGUAAGUCAAUAAUAUGGAACUCUUGAUUAUUUUUUUUAAUUCUACGAAAGAGCUGAUCAAGAUAGUGGAUCUUUUCAGUUGAAGUCAAGGUUUGACAGAUGGCACAAUUGCAGCCACCAUAGCAAAAAAUGACAUCCAAGAAUAAACGCAAGCGACACCUCUUCUGCAGAUAACAUACAUGUGGCUACCAAAAAAACAAGAGCAGAAGGAAACAAAAAUGCACAGUACCGCGUCAACAAUAAUAUUCCAAUUCAGGCUUAAUCGCUAAUAAGGCCUGAAGAUAAAAACGGACGAGAGAUGCAUAUGGAAUUCAGUGACAACAACAAUGUAUUGGACAGGUGAAACCGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.28%
ME_num:
MEP:
63.62%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.73
Avg Expression:
3.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.57254461386689 | 0.00298980485255937 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.2051424799151 | 0.00831326120513941 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.12101988069617 | 0.0194956198933133 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.02622030522207 | 0.00166150889970221 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.1871660749821 | 0.0268179847795922 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.26299701462575 | 0.000338269038944903 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.66787328259376 | 0.00310129760979454 |