RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5557

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

952681

End:

958878

Strand:

-

Ref_name:

OSA-LNCN5557

Sequence
(OSA-LNCN5557.1):

CAGCUACUAGCUAGUGAGUAGCAGAUUGCGUUAGCUAGUGGGUGACUCUCAAGUCUCAAUGGGAUCAGCAGUGACGAUCGACGUGCACGCUACCACAGAAUCGAUUUUUUUUUUAUAAAAUCCCUUUAGGUUGCAGGUGGUCCAUAGCUGCUUUCCUAUGGAAAAAUCGUUCCCUCAAACACAGUUCAAAAAUCACGUGUGAAAAUAAAUCUAUUUUCGUAAGACGGCAUGUUCAAAGCCCCGCCUGCCACCAGCUCAUCAGAUCAAGCUUACCCUUAAAAUAUCAAGUCCUCUCUCUCUCUUAUACUCAUCCUCUCCGCUCUCCACCCAUCACUUCCUCCACCUCCUCCACUUCCGCUCCUCCUCCUCCUCCUCUCUCCUUCGGUGGCGGACGGGAUCAGGAGCGGCCGACAACAGGCGAGAGCAGGAGCGACCGGCAACCACUUCUGCCGGUGGCAGGCAGGAGCGGGAGUGGCGAGCUCGGGAGCGGCCGACGACCACUUUCUCUGGCGGUGGACGAGAGAGGGAGCGAGAGUGGUGGGGAGCUCGGCGGCGGGCAGGAGCGAGAGCGCGGGAGGGGGGGUGGGAGCCCGGCGGCAGCGGGUUUGAUACGGUGGAGCGGAUGGUGGCGAUGGAUCUAGCAGUGAUGAGCUUGGCGGUGGGAUCCGCAUGGUGGGGAGCUCGGCGACGAUGGAUCCGAUAGGCUCUCCCCAUCCCGCGCGGAUCCCACCGCCUACCCAUCCCGCGCACAUGGAUCCAAUGCAUGGUUCUAGUGGCGGCGAUGGGAGACGGGGAUGGCGGCGGCGAUGACAACAAGGAUGAAUCUCGGGCUCAGGAGCUGCUAGGGUUCUAGAUUUUUUUUUUGCCGUUUUUUCUUUUUGCAGCCUGACGAUUUAUGUACCCACAUGUGAAAAUACAAUUUUCGGAAGCGGUUGUUCUACCCGCAUGCAAAAAUCGCAGACACCUGGAUGUAGGCGGGCUACCCCACCCGCCUACGAAAAUCGAUUAUGACCAUAUGAAAAAAUCAUUUAUGUAGUAGUGUUAUGUUUUUUGAACGAAUCGAUAAGCGCCAAUUUCAUUGAAUAGAGUUUAACUUUACAAGAAAGGGAGAAUUGCUCUUAUGCCCUUACUUUUAAACCCAAUUGUGAUUUUACUCUCGCUUUUUAGGAUUUUUAAAUUUACCCCUAAUAUUUUGAAAUGAAAUCACCAUUUACCCCUACAAUGACAGUUAGGUGGGUUCCACUAUAUUGAGUUAGAGAAUUGGAAGUCAUCAAAAGAGAAAAUUAGUUUAGGAAAUAUUAGAUUACCGUUCUAUCCUUAAGCAAUAUCAUACUGAUUCAUUCAUACCUAUUCGGUCAGAUUUGUUCCCCACUGUUCCUAUCCGCAAACCCUUGGGGUUGGGGAGGAGAUAGAGGAGGAGGAGGCGGCGAUUCUUCCACACAGCGGCCGGUCCUCGGCACGAGCACCAGGAGGCGGCGCCGCGGGUGGAGAAGCUCCGGUCAAUGGUGGCGCUAGCGACGCGAGCAGCAGCGUGGCAACAACGUAACUCGUCGGCGCGGCGGCCCUCGCGUCAUCGGCACGAGCACCAGGCGACGGCGGGGCGGGUGGAGAAGCUCCGUCCAAUGAUGGCGCCCGGCGAUGCCAGCAGGCGGCACGCGGCGGCGCUGGUGGAGAAGUUUCUGUCGAUGGCACUGGCAGCACCGACGACGUCUCCUCAGCGAGAGCACCAGCUGGUUGCUGGUGAGGCUUUUCUUGGACGAAAAGCUCACGCAGACCGCCGUCAUGGCUGAUGCUAUCGCGAUCUCUAGCCUGGAGUAAGACGCGCCAGAGGUGGUGGACUGACUGACUUCUUCCUAAGUAUUUUGCUUCUGUAUCGUGUAUAGCAUCAGUACUCUGUAGCAUGUGUGGGUUUGAUGCUUGCUGCUAAUUAACCAGCAGAUUAUGAAUGGAUUUAACUGAUGUGAUAUGCAGGCAUACUUUGGUUGAUCUCCCGUUUGCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

369

LEP:

75.0%

ME_num:

118

MEP:

23.98%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.96

Avg Expression:

2.15

Tip: OSA-LNCN5557 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-3.184119683983810.0123524696675118
2Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-2.67572628407440.0107696115992983