Chr:
Chr6
Start:
832247
End:
835101
Strand:
-
Ref_name:
OSA-LNCN5553
Sequence
(OSA-LNCN5553.1):
AACUGAACGAAAAAGAGACCAACUAAAGCAUCUCUGCUGCCAGGAUUCCUUCUCGAAUAUCAUGAAUGGCCAACCAAUACAUUCUAGCACUUGAAACUACACCUUCAAAUUUAAAUGUUUGCCAUUCAACCACCCUAACAGUUACGUCAGCUUCAAAUGGCUGGCCAUCACUAGCAUACAUGAAAACACUAGCAUUCCAACUGCCAAACAGAAUAUCGCAUGCACCCUCCUACUCCACUCUACUUGGCUGAAUUAGAACACCCCAUGCCAAAAGUCACAACCAGACGAACAGAACGCUGGAGCCAACAACAUUCUGUAGUCCCCGUGCUAACUAAACCAACAAUUUCCACUGAUAUAACAGUUCUAGCGCAAAAUUAGCCCGCACGAGCAACCAUCAAAAGGCCCCCCUCAAAACCAAGCGGGGGGCGCGACCUCGAGCUCUCCGCCCCCCACGAAUCGCGCGGCGAGAACUAUCCACCGAAUCCUCCAACCACGCGGCAACCGAAUCGUGCGGGGGUCAACACACCACACCCCACCACGUCGCCACCGGAAGAGGGAGAACCCAGCGCCCCGGGGCGGGGAGGAGCGGCGGAGGUGGAGGAGGAGGGGAUAGGGUUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.07%
ME_num:
MEP:
47.56%
HE_num:
HEP:
48.17%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.71
Avg Expression:
31.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.44066396519525 | 0.000106385057660827 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.21468923720299 | 0.000156632445398584 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.07525429274395 | 0.0230827697544108 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.79810536290165 | 0.0156280568156812 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.70877436390499 | 0.000961618853065814 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.71599040179974 | 0.0372692396852544 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 4.51937658909754 | 0.0106262483746377 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.61768206131496 | 0.00220885792198844 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.94282602758638 | 0.000712569661036569 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.24677610827518 | 0.00521133413092717 |