Chr:
Chr6
Start:
683730
End:
686656
Strand:
-
Ref_name:
OSA-LNCN5549
Sequence
(OSA-LNCN5549.1):
GUUCGUCUUAUUAAAAAAAUUUGUGAAAUAUGUAAAACUAUAUGUGUACAUGAAAGUAUAUUUAACAAUGAAUCAAAUGAUAUGAAAAGAAUAAAUAAUUACUUAAAUUUUUUGAAUAAGACGAAUGGUCAAACACGUACUUAAAAAGUCAACGGUGUCAAACAUUUUAAAACGGAGGGAGUACAAUUUUAAUUUCACCCUCCAUGCGUGUAUGUUUCAUCUAUUAAAUUUCAGGACAAAAUAACGAUGGGUUUGACAAUGCAUCGGCUGGAGAUAUCUCCGACGACAGUUUUACUGACGGUCCUCUGAGGCAAAACAAAAGUAUGCUAGCAUCUGAACAGAACGACACCAAUAUUUACAGUGGUUUAUGGAGCAAUAACUCGUCAGGCAAGGUAGGCUUACCCAUCAGAGAACCAGCUAAUGAAAUUUACAGAAGAUAUCUCAAGAAUACAAAACUGAGCGUGGACUUAGAGACAUCUAUGUUGAGGUUACCAGGUCGGCCGAACCUUGAGUUCACACUUGGGAUUGGGAAGGCUUCACAAUGAUACAUCAGAACCGCGAAGUCCAAGCAUGCAUAACUAAGUUGAUUGAUUUCGGUGUGCUAUAGCUAGCUUGACCCAGUUAGUAGUAUAUAGUGUCAUUUGCCCGAAAUGACUAGCUUGGCUAGAUAAGAAGCCAAUAAGACUGUGAAGUGUGAAGGCACAAAAAGAUUUAAAAAAAAAGAGGAGAGACACUGUAUUUUAGCUAGUUUCUUACACAUGCCUUGUUCUGAUAAAGGGCAUUGUGGAGAAAUAAAGAGAUUCUAUUUGAGAUGCCAGCACUACCAUAUAGAUAUACAAUAUAGUCUUGUCUGUAUGUGUGUGUGUGAGACAGACAAAGUAGGUUAGUACGUAGCAUAUGAUCUGGCUCUAUAUGAAAAAGUCAUAUGUUGUCUAAAGCUAUGUUCAUGCAUGGAGUGCAGCAAACGUGACAGGCAAGGGCUCAUCUUUUACUGCUAACAAAGAAGGAAAUGCUGCAUCACGCACGUGCAGUUCCCAAUUAGAGUCAGCUUUUCAGAGCCCCACAAAGCAAGAAAAUUUGUGCAUGAAGGAUGAUCUUUACUGAAUGCAGUCCUAACUUGUUUUCAUGAAUGGAGACUGAGCAUACAAUGCAUGCAGUGAGAGAUGUCAUUUAUUUGAAAACAUGUUUAUGAAAGCUUAAUUAAUGUUGUAUAAUGUGUGUACAUUGUACAAGAGAUCGAGUACCUAGAGGCUAGAGCUAGCUAGUUUCUAUAUAUAAUUUUUUUUGAGGUAAUUUCCUAUAUGUGAGUUGGUGAAAUAAAACAUCACUCCUGAGAGUACCAGUAUAUAUACUCAAUAUAUAUAUGCACUAGUUCUGAUUUCUUUUCUCUAGUUAACUAUUUCUUUGCUGUACGUAAUGCCCACAAGGCAAGAGAUCUACUACAUGUGUGCGGUGAAAACCUAUAUCAACAUGCAUGUAAGAAUGGGGAUUUGCAUUAAACAUGAAGCUAGCUAGAUGACGAAAAGGUAUCGAUAUGUACUAGAGCCAGAUGG
Sequence
(OSA-LNCN5549.2):
GUUCGUCUUAUUAAAAAAAUUUGUGAAAUAUGUAAAACUAUAUGUGUACAUGAAAGUAUAUUUAACAAUGAAUCAAAUGAUAUGAAAAGAAUAAAUAAUUACUUAAAUUUUUUGAAUAAGACGAAUGGUCAAACACGUACUUAAAAAGUCAACGGUGUCAAACAUUUUAAAACGGAGGGAGUACAAUUUUAAUUUCACCCUCCAUGCGUGUAUGUUUCAUCUAUUAAAUUUCAGGACAAAAUAACGAUGGGUUUGACAAUGCAUCGGCUGGAGAUAUCUCCGACGACAGUUUUACUGACGGUCCUCUGAGGCAAAACAAAACAAGGUAGGCUUACCCAUCAGAGAACCAGCUAAUGAAAUUUACAGAAGAUAUCUCAAGAAUACAAAACUGAGCGUGGACUUAGAGACAUCUAUGUUGAGGUUACCAGGUCGGCCGAACCUUGAGUUCACACUUGGGAUUGGGAAGGCUUCACAAUGAUACAUCAGAACCGCGAAGUCCAAGCAUGCAUAACUAAGUUGAUUGAUUUCGGUGUGCUAUAGCUAGCUUGACCCAGUUAGUAGUAUAUAGUGUCAUUUGCCCGAAAUGACUAGCUUGGCUAGAUAAGAAGCCAAUAAGACUGUGAAGUGUGAAGGCACAAAAAGAUUUAAAAAAAAAGAGGAGAGACACUGUAUUUUAGCUAGUUUCUUACACAUGCCUUGUUCUGAUAAAGGGCAUUGUGGAGAAAUAAAGAGAUUCUAUUUGAGAUGCCAGCACUACCAUAUAGAUAUACAAUAUAGUCUUGUCUGUAUGUGUGUGUGUGAGACAGACAAAGUAGGUUAGUACGUAGCAUAUGAUCUGGCUCUAUAUGAAAAAGUCAUAUGUUGUCUAAAGCUAUGUUCAUGCAUGGAGUGCAGCAAACGUGACAGGCAAGGGCUCAUCUUUUACUGCUAACAAAGAAGGAAAUGCUGCAUCACGCACGUGCAGUUCCCAAUUAGAGUCAGCUUUUCAGAGCCCCACAAAGCAAGAAAAUUUGUGCAUGAAGGAUGAUCUUUACUGAAUGCAGUCCUAACUUGUUUUCAUGAAUGGAGACUGAGCAUACAAUGCAUGCAGUGAGAGAUGUCAUUUAUUUGAAAACAUGUUUAUGAAAGCUUAAUUAAUGUUGUAUAAUGUGUGUACAUUGUACAAGAGAUCGAGUACCUAGAGGCUAGAGCUAGCUAGUUUCUAUAUAUAAUUUUUUUUGAGGUAAUUUCCUAUAUGUGAGUUGGUGAAAUAAAACAUCACUCCUGAGAGUACCAGUAUAUAUACUCAAUAUAUAUAUGCACUAGUUCUGAUUUCUUUUCUCUAGUUAACUAUUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.41%
ME_num:
MEP:
12.4%
HE_num:
HEP:
11.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.93
Avg Expression:
12.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.41065988166118 | 2.04047732340667e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.98048394992885 | 0.0116036507246645 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.66200503900645 | 0.000894425576294626 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.81810418446705 | 0.000115086044945284 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.38276281236473 | 0.0497876231098858 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.55090966059962 | 0.0172348952341269 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.30075322292333 | 0.0195002366639023 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.29124035304017 | 4.90851997778371e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.16635335138424 | 0.0202758352811529 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.93860276298708 | 0.00303327312378864 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.63833653128985 | 0.01113315782657 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.6908861335251 | 3.89204686962016e-06 |