Chr:
Chr5
Start:
28877092
End:
28878553
Strand:
+
Ref_name:
OSA-LNCN5516
Sequence
(OSA-LNCN5516.1):
GGAGAGGAGAGGAGGCGUGAUUGCCUGAACCUGAACGGGAAGCUGAACGGGGGGGAGGAGAGAAAGAAGGCAAACGGGAACGAGCGGUGCGAGAGGGAGGGGAAACAGCGAGGCUGGCGUUCGUGAGGCGAAGGUGGCAGGGCAGCGCCUCGUUUCGUUUGGCGUUUCGCCCGCCCCAUGUGGGGGAAGGAGGCGAGCGAGAGAAUUCACGGUAUACUUACUAUUGGAGCGUCGUUUUUUUCACGCCAAGACCAAUCAGUACAAGACUAGUAGAGCCAUCCAGCCUCCCUCGUCGUCGUCGUCUUCUCCGCGGCAGGAAGGGCCCGGAACCAACGGUGGAAAUCGCGCGGCAGCAGCAGCGGUAGUACAGCACGGCGCGCCUACUGCCGCGCGGUGGGCCUGGGGUGGCUGUCCUACGGCGAUCGAGGAGGACGAACGGACGGAGGAGGAGGAGCCGAGAGCGCCUCUGGUCUCGCCACGCGCGGGCCCUCGUGGCGCACGGCGACUAGCGGGCGAUCCACCCGCUUGUCCUCACGCGCGACCCACCACCCCACCUCGGAUCGUACUGGUGCUCGUGUUGCGUCCCCAGCGGCCAGCGCCAGCGGCUGCCUACACACGUGCCCUGUAGCCUGCUGCUUACCAGUUUUAUAAAACCAUACUGUUAUUGUGGUUAUCAUAUAUAUCAACUAUUUUAGUUUUUUAAACUAUGAUAUAUCUCACGAUAACAGUUAAAUCAUAAGUGAC
Sequence
(OSA-LNCN5516.2):
AAGGAGGCGAGCGAGAGAAUUCACGGUAUACCAAUAUUUUAAGACGGAGGAAGUACCGUUUUACUACAUGCAAAUGACCAGCGCCUUGUACAAGUGGGAGAAUGGUGACAAUCGUGCACCGGAGCCUUGCAGGACCUAUGACACCCAACAGUACGAUAAAACGAAUCCAAAUAGCUCUUGCUUGUCUUUUAAAACCUGUCCUUUUGCAUCUCGGUGUUCCUUUAUUAUUUCGGCACUAAUAUAGUACUGUUCUUUCUCUCUUUCAGUUACUAUUGGAGCGUCGUUUUUUUCACGCCAAGACCAAUCAGUACAAGACUAGUAGAGCCAUCCAGCCUCCCUCGUCGUCGUCGUCUUCUCCGCGGCAGGAAGGGCCCGGAACCAACGGUGGAAAUCGCGCGGCAGCAGCAGCGGUAGUACAGCACGGCGCGCCUACUGCCGCGCGGUGGGCCUGGGGUGGCUGUCCUACGGCGAUCGAGGAGGACGAACGGACGGAGGAGGAGGAGCCGAGAGCGCCUCUGGUCUCGCCACGCGCGGGCCCUCGUGGCGCACGGCGACUAGCGGGCGAUCCACCCGCUUGUCCUCACGCGCGACCCACCACCCCACCUCGGAUCGUACUGGUGCUCGUGUUGCGUCCCCAGCGGCCAGCGCCAGCGGCUGCCUACACACGUGCCCUGUAGCCUGCUGCUUACCAGUUUUAUAAAACCAUACUGUUAUUGUGGUUAUCAUAUAUAUCAACUAUUUUAGUUUUUUAAACUAUGAUAUAUCUCACGAUAACAGUUAAAUCAUAAGUGAC
Sequence
(OSA-LNCN5516.3):
ACGGAGGAAGUACCGUUUUACUACAUGCAAAUGACCAGCGCCUUGUACAAGUGGGAGAAUGGUGACAAUCGUGCACCGGAGCCUUGCAGGACCUAUGACACCCAACAUUACUAUUGGAGCGUCGUUUUUUUCACGCCAAGACCAAUCAGUACAAGACUAGUAGAGCCAUCCAGCCUCCCUCGUCGUCGUCGUCUUCUCCGCGGCAGGAAGGGCCCGGAACCAACGGUGGAAAUCGCGCGGCAGCAGCAGCGGUAGUACAGCACGGCGCGCCUACUGCCGCGCGGUGGGCCUGGGGUGGCUGUCCUACGGCGAUCGAGGAGGACGAACGGACGGAGGAGGAGGAGCCGAGAGCGCCUCUGGUCUCGCCACGCGCGGGCCCUCGUGGCGCACGGCGACUAGCGGGCGAUCCACCCGCUUGUCCUCACGCGCGACCCACCACCCCACCUCGGAUCGUACUGGUGCUCGUGUUGCGUCCCCAGCGGCCAGCGCCAGCGGCUGCCUACACACGUGCCCUGUAGCCUGCUGCUUACCAGUUUUAUAAAACCAUACUGUUAUUGUGGUUAUCAUAUAUAUCAACUAUUUUAGUUUUUUAAACUAUGAUAUAUCUCACGAUAACAGUUAAAUCAUAAGUGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.67%
ME_num:
MEP:
19.51%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
1.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.8161080605988 | 0.0258509612715647 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.67437636784809 | 0.0312748185389562 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -3.9073782442523 | 0.00211461558586612 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.97380479494424 | 0.0412911939682608 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.14463741332277 | 0.00102335593290848 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.63290546431812 | 0.0275988041814026 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.10758448300021 | 0.0172880500274121 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.77677668515606 | 3.92839018513466e-05 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.15651300172433 | 0.0274152763627877 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.52043144207187 | 0.0433521560615728 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.26080771817049 | 0.00326923252850245 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.25360151350831 | 0.0104473771674402 |