OSA-LNCN5511


Function Link


Basic Info

Chr:

Chr5

Start:

28564481

End:

28566110

Strand:

.

Ref_name:

OSA-LNCN5511

Sequence
(OSA-LNCN5511.1):

AUUGUAAGUCACUAAAUUACAUAUGUAAUUUUAAUAUAUUUACAAUGUAAGUCUCAAAAUUACAUAUGUAAGUACUAAAAUUACAUAUGUAAAUUCGAAAAUUACAUACUAAUUACAUAUGUAAGUGGGGUGUAAAUGAGGUGUAACUACUAUGUAAGUGGCUGAAAAAAAAAUCGACUAUAGCAUAUGACGCUAUAUUUAUAGCAACUCCGGGUACUAGUGCCGUUUCGUCCUGUUCUUCCGUUGUUCCCUCACGAGCACUUCGUAUUUUACACUCACUACCAACAAGACCAAAACGCACUGUGUACGUAUAUGGAGCACAAGCAUACCUAUCUGUCCUUAAAAAAAUUAAACCUGGAUUUAAAUCAGACACAUAUCUUAAAAUAGAAAUGUGUAUAUAGAUUCAGACUCAGGGUUUAAUUCUUUUAGGACAUAGUAGUAUACUAGUAGUGUGAUACUCUCUCCGUCUUAAAAUAUAAAAACUUAGGACCGAAUAGGAUAUUUUCUAGUACUAUACAUCUAAUUAACUGUCCUAGAUUCUUAUAUUUGGACGGAGGGAGUAUAUGCAUCCAAUUAUCUGCACCUGCCGGCUUGGUGGCCGGUCAGAUCCAAAUUAAAUUUGACCCUCCCUGAAUGCAGCCAUCUCCACGAUCUCGCAAUCUCGCGCUGGUGUCUGUUUCUGGAGGCUCACAAUUAGCUAUACUAGCGGUAGGGUUGGUAGCUAAUUAAGCUAGUAUUAGCCUCUUGAAGCAGACAACGCGGCAAUGGUAGGUAGUAGAACCGUCGUGGAAGUAGUAGUAGUAGGAAGGAAUGCCGAUCAGGUUCAGCUGCUAAAUCAAAAUCAAAGACUUGUAACGACUCGGAAGUGACCAUGAUCAACUCUCCUCUCCAUCCUCACCAACCCACGUCGCCCGUCAACUUAAAUCCGCCGCGUCCGCUGCUCGUCUCCGUCGCAACUGUCGGCAAGCGUCCGUCCCUGGCCACGAUUCAGAGAGAUUUCCAUUUGCGAAUGGUCGGCGCUGUGCCUGGCCGAUCCGCAUCAUGUCAGCGUGAGAUCGACAGUGUCUUCUCUGCUGCGACGACGACGACGGGCGGUCGCGACUGGACACGGCACGUAUCGUCGUCGGCGAUGGAAUAUCGAUAUAUCCGGCCACGCACGUUGGGACAAGACAGGAGUCUCAGGGCAGGGGGCCCCGGGCCAUGAGACACGCCGGCCAACCAGGGAGGGCGUCAUGUGGCUGCCAGGCGCGGCGCCACCUCGCGCCCAUGCCACGCUGCAGUUGGCUCACGCGUAGCUGUCUGCCGUGAGUACGCGUGGGCGAUUCUCUCCGGUUCCAUAUGUCACCCGUCCUACGGUCCAUUUCGUAUCGCCGGUGAGAAGAAUAAUCCGUGCAUCGCGACUAGACGUUGUUGUUUCUGAACUGGAAGUAGCCUGGUUUUGUUUAAUUGGGCUCGGUGUCUGGCUUUAGGCCACUGACCAAAGCAAACAUUUUGGAGAUCACAACCUGUGACGUCUGAUACGACCACAUGUCGGGUGAGUGUCUAUGAAUGUCUGCAUCAGCUAGCGUGGUCGGUACAAACAGGAUCAUGUUGUUUUGGAUAGAACAACAAAAAGAAAUCCAUGGAUUAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

461

LEP:

93.7%

ME_num:

29

MEP:

5.89%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.95

Avg Expression:

1.50

Tip: OSA-LNCN5511 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA2.187601922812180.0408139603931913
2Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"5.444610636620060.00911860786499959
39L136 // leaf // control--/--9L136 // leaf // salt1.215285450933160.00198860309041231