Chr:
Chr5
Start:
28017353
End:
28018829
Strand:
-
Ref_name:
OSA-LNCN5498
Sequence
(OSA-LNCN5498.1):
GACGCGGAGGCGCGCGCGGCGGCAGUCGCGGACGAGGCGGCAGCCGCUCACGGAGGCGGAGGCGAGGAGAGGCGCGGAUGAGCGGCGGCAGUCGGCCGCGGAGGCGGAGGCGGUUGCGGACGAGGCGGCGUCGGACGUGGAGGCGGCGGCGGCCGCGCACGGAGGCGGAGGCCAGGAGAGGCGCGGACGAGCGGCGGCAGUCGGUCGCGGAGGCGGAGGCGGUCGCGGACGAGGCGGCGGCCGGACGCGGAGGCGGCGGCGGUCGCGGAUGAGGCGGAGGCCGCGCACGGAGGCAGAUGCGAGGAGAGGCGCAGACGAGCGGCGGCAGUCGGUCGUGGAGGCGGAGGCGGUUGCAGACGAGGCGGCGGCCGGUCGCGGAGACGGAGGCGGUCGCGGACGAAGCGGCGGCUGGUCCUGGAGGCGGCGGCGGUCGUGGGGGCAAGGCGGCGGCGGGCGCGGAUGAGGCGGCGUCGGUCGCAGACGAGUGGCGGCAGUCGCGGAUGAGCUGACGCCGUGCGCUCGUCCCAGGUGGGACGAGUUCGUCCGGCUCUUUUUCCCGGAUCGAUUGGUCCCGGAUGAGGAAUAUUACUCUCCAGGGACCAAUCCAUCCUACCCACCCCUCAACCAAACACCUCUAAAAG
Sequence
(OSA-LNCN5498.2):
GCGGAGGCGAGGCGAGGCCCGGACGAGCGGCGGCAGUCGGUCGCGGAGGCGGAGGCGGUUGCGGACGAGGCGGCGUCGGACGUGGAGGCGGCGGCGGCCGCGCACGGAGGCGGAGGCCAGGAGAGGCGCGGACGAGCGGCGGCAGUCGGUCGCGGAGGCGGAGGCGGUCGCGGACGAGGCGGCGGCCGGACGCGGAGGCGGCGGCGGUCGCGGAUGAGGCGGAGGCCGCGCACGGAGGCAGAUGCGAGGAGAGGCGCAGACGAGCGGCGGCAGUCGGUCGUGGAGGCGGAGGCGGUUGCAGACGAGGCGGCGGCCGGUCGCGGAGACGGAGGCGGUCGCGGACGAAGCGGCGGCUGGUCCUGGAGGCGGCGGCGGUCGUGGGGGCAAGGCGGCGGCGGGCGCGGAUGAGGCGGCGUCGGUCGCAGACGAGUGGCGGCAGUCGCGGAUGAGCUGACGCCGUGCGCUCGUCCCAGGUGGGACGAGUUCGUCCGGCUCUUUUUCCCGGAUCGAUUGGUCCCGGAUGAGGAAUAUUACUCUCCAGGGACCAAUCCAUCCUACCCACCCCUCAACCAAACACCUCUAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.11%
ME_num:
MEP:
17.28%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.83
Avg Expression:
1.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.16032582250338 | 5.41551679306202e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.792521112943 | 0.000970758003551267 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.27377865544589 | 0.0038970184987474 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 5.09648925296286 | 3.65099149765851e-05 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.98322013630553 | 0.0163039668125139 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 7.08826818649528 | 0.000617122645422338 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.94731814229522 | 0.0055973762582681 |