Chr:
Chr5
Start:
26705018
End:
26708389
Strand:
-
Ref_name:
OSA-LNCN5483
Sequence
(OSA-LNCN5483.1):
CCGGUGGCGGAGAACCGACGCGGAGAAAGCCGGUUGCACUCGCGCUGUUACCUGCGCAUUGCGGCGGCCUCCCGUGCUCCGAUCCGAUAUACGCUCGUCUGAUGUGGAUGGGAGAUGCAACGACGUCGUUGAAGAGAGUGCCAACGACAGGCACAUGGACGACCAUCUUGCGAUCGAGGACGGACAGCCCUGAUCGAGAAGACAUGCCACAUCUUGAUUCGAUUCCACUGGAGUAAGUGGCCGGGCACAUCAAAAGGGCCGUAACAAAUACGUAUCGAUUUCUGUACGUACUGGAGUACUUCCUUUUGGCGAAACAAGAUCCCGAUCAAUAUACCCUCCAUCUUUCCGUAGCAAAAGAAAGGUACCGAAAUGUAUGUGCAUCAGUACCAUUUCACACAAAAUUCUCUUGCUGAUGAACAACGUACACCACAUCCUCCCAGAGUCCAAACUGUGGCCGCGAUCGCAUAAUAUCUGGUGCUUUGGUGCAGCUCAUUUUUGUCCGUGAGAACAAGUUGAUUCGAUAUGAGAAUCCAACUGCAGCCGAAAUAUGCCAACCUAAUGGCAAAGGAUAUGUGCAGCGCAAGGUUAUGGGCUCUGACCUAUAAGCGCGUGCACAGACGAGGUAUCGGAUUAUAUUUGUCAAUCCAACCUUUGCUUUUGGAAGUUGAUAAAAAAUGCCAACCAAAAACUUUUGCAAUGUUCUUUGUUUAUACUCUAGCUUUGAUGCUCCAGGUGCAAGUGCAUGAAUUCGGCCAUGUUCUUUUCUGAUUCUGGAUUCUAGAUUUUCAUUUGCACGCUUCUAAAGCUACUAAACGAUACGUUUCAUAUAAAAUACUAGAGUAUGCAAAUUUUUCAUGGGAUACUUUUUAAAGCAACUUUUUCAACUCUAUAGCAGUUAAUUUAUUCAUCUGUAUAUAUCCUCAAAUGGU
Sequence
(OSA-LNCN5483.2):
UCGAGUGCAAACAAACUUGCACGUCAACUCUCCUUACACCUCAUGGCAACAUUCUCCUGAUGUGCUUUAUGCCGAGUGCCAACGACAGGCACAUGGACGACCAUCUUGCGAUCGAGGACGGACAGCCCUGAUCGAGAAGACAUGCCACAUCUUGAUUCGAUUCCACUGGAGUAAGUGGCCGGGCACAUCAAAAGGGCCGUAACAAAUACGUAUCGAUUUCUGUACGUACUGGAGUACUUCCUUUUGGCGAAACAAGAUCCCGAUCAAUAUACCCUCCAUCUUUCCGUAGCAAAAGAAAGAGUCCAAACUGUGGCCGCGAUCGCAUAAUAUCUGGUGCUUUGGUGCAGCUCAUUUUUGUCCGUCGUCUCUGCAUGCAUCCAUCGAUCCUUAAUAAUCAACGGACGCUUUUGACGCCAUGCAUGGCUUUUGAGGGAUUCGAUCGCCUAAAUAAUUGGGGUUCGUAUAGAUCUCGAUACUGCCACAGAUUUUCCUCAUUUGGUUCUAAUCAAGAAUUUUUUUUGUGAUGAAAAACAGUGAGAACAAGUUGAUUCGAUAUGAGAAUCCAACUGCAGCCGAAAUAUGCCAACCUAAUGGCAAAGGAUAUGUGCAGCGCAAGGUUAUGGGCUCUGACCUAUAAGCGCGUGCACAGACGAGGUAUCGGAUUAUAUUUGUCAAUCCAACCUUUGCUUUUGGAAGUUGAUAAAAAAUGCCAACCAAAAACUUUUGCAAUGUUCUUUGUUUAUACUCUAGCUUUGAUGCUCCAGGUGCAAGUGCAUGAAUUCGGCCAUGUUCUUUUCUGAUUCUGGAUUCUAGAUUUUCAUUUGCACGCUUCUAAAGCUACUAAACGAUACGUUUCAUAUAAAAUACUAGAGUAUGCAAAUUUUUCA
Sequence
(OSA-LNCN5483.3):
CCGGUGGCGGAGAACCGACGCGGAGAAAGCCGGUUGCACUCGCGCUGUUACCUGCGCAUUGCGGCGGCCUCCCGUGCUCCGAUCCGAUAUACGCUCGUCUGAUGUGGAUGGGAGAUGCAACGACGUCGUUGAAGAGGCACAUGGACGACCAUCUUGCGAUCGAGGACGGACAGCCCUGAUCGAGAAGACAUGCCACAUCUUGAUUCGAUUCCACUGGAGUAAGUGGCCGGGCACAUCAAAAGGGCCGUAACAAAUACGUAUCGAUUUCUGUACGUACUGGAGUACUUCCUUUUGGCGAAACAAGAUCCCGAUCAAUAUACCCUCCAUCUUUCCGUAGCAAAAGAAAGAGUCCAAACUGUGGCCGCGAUCGCAUAAUAUCUGGUGCUUUGGUGCAGCUCAUUUUUGUCCGUCGUCUCUGCAUGCAUCCAUCGAUCCUUAAUAAUCAACGGACGCUUUUGACGCCAUGCAUGGCUUUUGAGGGAUUCGAUCGCCUAAAUAAUUGGGUGAGAACAAGUUGAUUCGAUAUGAGAAUCCAACUGCAGCCGAAAUAUGCCAACCUAAUGGCAAAGGAUAUGUGCAGCGCAAGGUUAUGGGCUCUGACCUAUAAGCGCGUGCACAGACGAGGUAUCGGAUUAUAUUUGUCAAUCCAACCUUUGCUUUUGGAAGUUGAUAAAAAAUGCCAACCAAAAACUUUUGCAAUGUUCUUUGUUUAUACUCUAGCUUUGAUGCUCCAGGUGCAAGUGCAUGAAUUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
9.35%
HE_num:
HEP:
90.45%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.87
Avg Expression:
144.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.49221307768995 | 7.09604200822202e-23 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.91615239210934 | 2.2263568012048e-28 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.68225759285815 | 6.29772711880583e-27 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.37881804750888 | 8.15018117324252e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.02336961735913 | 2.04940935149277e-21 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.1570165178368 | 3.5490820698067e-06 |
| 7 | AzuNIL // root // control--/--AzuNIL // root // Al | 1.70887424529257 | 0.0476180612539366 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.26388367061914 | 7.78931961316734e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.38543923154083 | 7.10352196062009e-27 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.28336571124049 | 0.00031088156302689 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.13649311567667 | 0.00108477471378409 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.04259341760949 | 1.10398123903337e-18 |
| 13 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.34248648446895 | 1.47774419847277e-06 |
| 14 | 9311 // leaf // control--/--9311 // leaf // salt | 1.97335023408292 | 4.23778311878611e-18 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.55999523618894 | 7.32531669009119e-15 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.30753214524078 | 1.01680426491006e-27 |
| 17 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.09419690206306 | 2.36065744580217e-08 |
| 18 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.09413234640051 | 2.31274628099373e-08 |
| 19 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.09405462621358 | 2.38169844329649e-08 |
| 20 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.81750917918678 | 1.68993733490831e-12 |
| 21 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.24697423953835 | 0.0312693121506605 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.53924611468912 | 1.84482437112672e-23 |
| 23 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.10832718351215 | 5.14532646954877e-05 |
| 24 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.06221160363031 | 1.08197625860031e-22 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.0335055655076 | 5.48304712128637e-26 |