RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5481

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

27311287

End:

27312999

Strand:

+

Ref_name:

OSA-LNCN5481

Sequence
(OSA-LNCN5481.1):

CAGGUUUAUUUUUUGACGCAAAGAUUCAGGUUUAUGUUUAACAUUACUGGGCCUUCUCAUUGAGUUGAUCCAGCCUGAAUAGGUUUAGCACGGCCCAUUAUGAAUUUCAGAAUAUGGGCCUCAAAAAGUCUAACAUGAACUACCAUGUCUGACUGGGCCGGUUUAGUACGUUCCUUAAGCCAGUUGACAGAAACAAAAGGGUGCUUCACCAGCCGUCCCUCAACUUUACGUCAAGUUUAUAUCACAUCCCUUAUCUCCAAUACUGAAAUUUUCACCCCUAAAUUAUACAAAACCGUGCAAUUUGGGUUCUAUAUGGAUGUCGGAUUUCGCUGACGUGACAUCCUAGUCAGCAAAAUAAAAUUAAUAUGUAGGGCUCACGUGUCAGCCCCCAUCAUCUCUCUCUUUUCUUUCCAAGCCUGGGAGAGAGGGUGAGGCAGCCGGCGGAAGAGGGUGGAGAGGUGGCUGGCCGCGCCCGACGGGAGAGGUGCCUAGCAAGCCUGGGAGAGAGAGGGGGAGAGAAGCGACUAGCAAGCCUGGGAAAGAGAGGGAGGGAGAGGCGGCCGGCCGCGCCGACGGGAGAGGAGGCCGGUGAGCCUGGGAGGGAGAGGGGGAGAGAGGCAGCCGGCCGCGUCGGUGAGAGAGGGGAGAGAGGCAGCCGACCACUUCGCCUUCACACCGGCAUCCCCCGCCCACUCCCUGCACCCAAAUCCGUCGUUGUCUCGCCGCUUCCAUGACCCUUCCGCCGCGGACUCCUCCUCCUCCUCCACCUACCGUCGCACAACAUCUUCCACCUCCACCUCCACCUCACCUACCUCCGCCGCAAACCCUCACCACUGCCGCCACAUCUUUGCCUCUUCCUCCUCCCCAACCGCCAUUGACAGGUUCGACAAUGGCAUCUCGCACCUCAACUCCUUCCUCCGCCGCCAGCGCACCGCCAUCGGUGAGCUCGGCUUCGGUGGACGCCCAGCCUCGAGGUCCAUGAAGAUCGUGCUCGCCGCCGCCUCCACCAAGAAGACGCGGGCGGGGUCAGCCGCGGCUUCGGUGGGCGCUCAAGGCGGCGGUGGAGCCUCUCGAGGCGGCGCUCACUGGCCGCCUCCCCCUCCCUCCCAGGCUCGCCAGCCGCCUCUCCCGGUCUCUCCCUCUACCGCUGGCAGCCUCCCAGGAAGAAAAGAAAUAUAAAAAAAAAAGAGAGAAAAGAGAAGAAGAAGGGGGAGAUGCAAACCCCACAUUUUUUUCUCUUCUAAGUGGGCCUUAUUUUAUUUUAUUUUUUUCUAACUAGGAUGCCAUGUUAGCGAAACCAGAGAUCCAUCUACUAUGGGCACAAAUUGCAUGGUUUUGUAUAGUUUAGGGAUAAGAUUUCUGGUAUUGAAGAUAAAGAAUGUGAAACAAACUCCACAUAAAAUUAAGGGAUGGCUGGUGAACUUCCUCAAGUCUAUUCACUUUAGCUUUCCUAAAAGAGAAUGUCUAUUCACUUUAGCUGAGCCUUACAUAAAGCAGGAAAGGUUCCUAUAUUGUAGAAAAAAUGUAUGGAGAAUUUACCCAAAAAAAGGAAGUGAUUGAAAGCAAGAACUAAAGGCAUCACCUUGUUCACCAGCAGGUGGUGGGAAGAACUGAAGGUAGCAG

Sequence
(OSA-LNCN5481.2):

CCCCAUCAUCUCUCUCUUUUCUUUCCAAGCCUGGGAGAGAGGGUGAGGCAGCCGGCGGAAGAGGGUGGAGAGGUGGCUGGCCGCGCCCGACGGGAGAGGUGCCUAGCAAGCCUGGGAGAGAGAGGGGGAGAGAAGCGACUAGCAAGCCUGGGAAAGAGAGGGAGGGAGAGGCGGCCGGCCGCGCCGACGGGAGAGGAGGCCGGUGAGCCUGGGAGGGAGAGGGGGAGAGAGGCAGCCGGCCGCGUCGGUGAGAGAGGGGAGAGAGGCAGCCGACCACUUCGCCUUCACACCGGCAUCCCCCGCCCACUCCCUGCACCCAAAUCCGUCGUUGUCUCGCCGCUUCCAUGACCCUUCCGCCGCGGACUCCUCCUCCUCCUCCACCUACCGUCGCACAACAUCUUCCACCUCCACCUCCACCUCACCUACCUCCGCCGCAAACCCUCACCACUGCCGCCACAUCUUUGCCUCUUCCUCCUCCCCAACCGCCAUUGACAGGUUCGACAAUGGCAUCUCGCACCUCAACUCCUUCCUCCGCCGCCAGCGCACCGCCAUCGGUGAGCUCGGCUUCGGUGGACGCCCAGCCUCGAGGUCCAUGAAGAUCGUGCUCGCCGCCGCCUCCACCAAGAAGACGCGGGCGGGGUCAGCCGCGGCUUCGGUGGGCGCUCAAGGCGGCGGUGGAGCCUCUCGAGGCGGCGCUCACUGGCCGCCUCCCCCUCCCUCCCAGGCUCGCCAGCCGCCUCUCCCGGUCUCUCCCUCUACCGCUGGCAGCCUCCCAGGAAGAAAAGAAAUAUAAAAAAAAAAGAGAGAAAAGAGAAGAAGAAGGGGGAGAUGCAAACCCCACAUUUUUUUCUCUUCUAAGUGGGCCUUAUUUUAUUUUAUUUUUUUCUAACUAGGAUGCCAUGUUAGCGAAACCAGAGAUCCAUCUACUAUGGGCACAAAUUGCAUGGUUUUGUAUAGUUUAGGGAUAAGAUUUCUGGUAUUGAAGAUAAAGAAUGUGAAACAAACUCCACAUAAAAUUAAGGGAUGGCUGGUGAACUUCCUCAAGUCUAUUCACUUUAGCUUUCCUAAAAGAGAAUGUCUAUUCACUUUAGCUGAGCCUUACAUAAAGCAGGUGGUGGGAAGAACUGAAGGUAGCAG

Sequence
(OSA-LNCN5481.3):

CCUGGGAGAGAGGGUGAGGCAGCCGGCGGAAGAGGGUGGAGAGGCGGCCGGCCGCGCCGACGGGAGAGGAGGCCGGUGAGCCUGGGAGGGAGAGGGGGAGAGAGGCAGCCGGCCGCGUCGGUGAGAGAGGGGAGAGAGGCAGCCGACCACUUCGCCUUCACACCGGCAUCCCCCGCCCACUCCCUGCACCCAAAUCCGUCGUUGUCUCGCCGCUUCCAUGACCCUUCCGCCGCGGACUCCUCCUCCUCCUCCACCUACCGUCGCACAACAUCUUCCACCUCCACCUCCACCUCACCUACCUCCGCCGCAAACCCUCACCACUGCCGCCACAUCUUUGCCUCUUCCUCCUCCCCAACCGCCAUUGACAGGUUCGACAAUGGCAUCUCGCACCUCAACUCCUUCCUCCGCCGCCAGCGCACCGCCAUCGGUGAGCUCGGCUUCGGUGGACGCCCAGCCUCGAGGUCCAUGAAGAUCGUGCUCGCCGCCGCCUCCACCAAGAAGACGCGGGCGGGGUCAGCCGCGGCUUCGGUGGGCGCUCAAGGCGGCGGUGGAGCCUCUCGAGGCGGCGCUCACUGGCCGCCUCCCCCUCCCUCCCAGGCUCGCCAGCCGCCUCUCCCGGUCUCUCCCUCUACCGCUGGCAGCCUCCCAGGAAGAAAAGAAAUAUAAAAAAAAAAGAGAGAAAAGAGAAGAAGAAGGGGGAGAUGCAAACCCCACAUUUUUUUCUCUUCUAAGUGGGCCUUAUUUUAUUUUAUUUUUUUCUAACUAGGAUGCCAUGUUAGCGAAACCAGAGAUCCAUCUACUAUGGGCACAAAUUGCAUGGUUUUGUAUAGUUUAGGGAUAAGAUUUCUGGUAUUGAAGAUAAAGAAUGUGAAACAAACUCCACAUAAAAUUAAGGGAUGGCUGGUGAACUUCCUCAAGUCUAUUCACUUUAGCUUUCCUAAAAGAGAAUGUCUAUUCACUUUAGCUGAGCCUUACAUAAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

55

LEP:

11.18%

ME_num:

344

MEP:

69.92%

HE_num:

92

HEP:

18.7%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.66

Avg Expression:

7.45

Tip: OSA-LNCN5481 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.944150812161210.0426666125320968
2Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-1.19310167556840.0349527503260516
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN2.097741661315880.0190086042340097
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN3.370268784902792.51334372578143e-06
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA3.495697085517821.2389231732169e-05
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN3.582384898455832.51286882206307e-06
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.46288572068510.00565093574898292
8IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h1.42528783193150.0499964770021563
9BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs1.079242674733180.0194930945146906
109311 // leaf // control--/--9311 // leaf // salt1.208060788752155.49208927924391e-06
11Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl-1.059344588516230.00093415178524124
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.596003419875070.000921686816580007
13Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN3.251714900444837.04815734613579e-06
14Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.931443710093610.0416519151854192
159L136 // leaf // control--/--9L136 // leaf // salt1.439003859770249.16603063253436e-07
16Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA2.091257324989020.00722302186256508