Chr:
Chr5
Start:
27297130
End:
27297620
Strand:
.
Ref_name:
OSA-LNCN5478
Sequence
(OSA-LNCN5478.1):
GGAAUCGAUCACACACACAAACUAAAAAGAGAUUGAUGAUGAGAUAAAGUAUGCAAAAUCCGUGGAAGAAUCGGACGAAGAUAUGGCCAUGGGCAAACGCAUGCCACGUACGAGAUAAGGAUGAUACGCCUGCAUGCGUGCGUGCAUAAUCGUUGGAUUGAUCAUGCAUGUAAUAUUUUAUGCUGCUGCUAAGUACGUAUGCUGCCAAUGCACCGGCCUUCUUAAUUUGCUAUCUUACCUCAGCAUCAAACAUAUCACAUAGUCGUUAAUCAAGUUGGAGAGCUAGCUAGCUAAAGCCACCAUAUGUACAUACAAAGACACAUGUGCUGAUGUGCUCAUCUCUCUCUAUCUGAAUCUGCUUUUUUUGUGCAGAAAGAAACUAAACUCUGAAACUGGCAAAUGAGGUCAUGACACGAGCAGAUUAGCCACGCGAGCAACAGCACAAUAAUUAAAGUGGAUAGAAAAGCAACAUGAAACCGGGUUGAUUUGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.15%
ME_num:
MEP:
2.44%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
0.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.48613367306844 | 0.011653342366144 |
| 2 | 9311 // leaf // control--/--9311 // leaf // salt | 5.1675547203407 | 0.00160774180878161 |
| 3 | 9L136 // leaf // control--/--9L136 // leaf // salt | 5.64940122078721 | 0.000326922296169688 |