Chr:
Chr5
Start:
26848543
End:
26849569
Strand:
+
Ref_name:
OSA-LNCN5475
Sequence
(OSA-LNCN5475.1):
CAUAACUUUGCAAUUAGUUUUUUUAAUCUAUAUUUAAUACUCCAUACAUGUGUCCAAAUAUUCGAUGUGAUGUUUUGGGAAAAAAAUUGGGAACUAAACCAGGCCAAAUAACGUAUGAUUGAUUGAGUUUUAAUUAUUACAAACUUGAAAAAUAGAUUAAUAUGAUAUUUUAGAGCAACUUCCAUAUAAAAAGUUUUCACACGAAACGUACCGUUUAGCAAUUUGAAAAACAUGCAACGGAAAUCUUAAUCUCCAUCCAACUUUUAUUGGAGAAAAGACCAGGACCCAGCUGUGGAUGCUCACCAGGACGACGUCACCUCCCUCUUCCCUGGCUUCUCCCCUGCACUAUGCUCGAUGAGAGAUUUGAUAAUUUAACACUCCUUAAAAUGGGUUUUGAUUAUUUGAAAUCCUGUCCCACUUUCAUUCACUCAGAUGAUCCCACAUGUCAUUCUCACAAGUGUCAACUAAAACAAUUGGACAAUGAAAAAAGUGUUAAAUUAUCAAAUUUUCCUGCUCGAUCGGCACAGGCGAGACAAUACGGGAAGAAUUUUUUUUUUUACGCAGAGAGGAUGGGGGAGAUUCUCGACGCACAAAGAAUAUAUUUUUAUCGUCUCCGUCCCAAAAAUAAUUACUACUAUAUUUGAGAGGGUAAUAUGCAAGUUCCCUCUGUCUCCCAAAAUAAGUUAUUAUGAGAUAUGGCAUAUUCCCUCUAUCUUAUAAAAAAAAACUCAUCCUUAUAUUUCCAUUGAAAGUUUAGUACUAAUGUGAAUUACCUAAAUGCCCUUCACCCGAAGGGCAGUUUCCCAACGAGGCAACGAUCGAGACGAUGCUAGAAGCAAACAGAAUCUCAUCCCCAAGCGGCCGGAAGACGCAGCCUACCAGAGAGAGAAGGGGAGGGGGAAUUACCGCCGGUGUUCGCCGCCGAUUCAAACCCCAGCUUCCACGCCCAACGAUCGAGAGCAAACAAGCAGAAUCCUACCCACCCCAAGCGGCCGGAAGACGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.72%
ME_num:
MEP:
73.98%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.69
Avg Expression:
4.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.87125997497942 | 8.5427538402376e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.11737797199084 | 1.70045460318301e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.33680035227329 | 0.000236789524348176 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.77458227463937 | 0.0119103097639023 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.46749481768335 | 0.0049463812889474 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.02416816144667 | 0.0160726782224518 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.13573008493964 | 1.40855519491541e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.83199284638379 | 0.000176895906324227 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.08814193385154 | 0.00472943227717799 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.12217621100815 | 5.98048973172406e-05 |