Chr:
Chr5
Start:
26613151
End:
26613952
Strand:
+
Ref_name:
OSA-LNCN5473
Sequence
(OSA-LNCN5473.1):
GGAAGAGGACGCCAUUUUCGCUGGCUUCUUGAGCGGGUGGGCAACUGACUGGGCCGCCGCCUAAAUGCAAUGUGCUAUAUAAUUGAAGCGCAUCGUCGACUCGUCGUCAUCAUCUGUCGCUCCCAGAGAUGUCCUGCCGGAUGCCCUGCUGAAAGGUGCCGUACUGCUGUUUGGGUCUCCUUGAUCGAUGUCUGCUUUGGAAGGAUUUCUAAACGAUCCAAACAAUGGAGCAUUUUCGCUAGCUGCUCCGAGAUGAGCAUCGCUGGACAAGAAAACCACAGCAGAUGAGACCAAUUGAUCGGGAUUAAUGUGCAUUGAUACGCUACCUCGUAUCAUUCCUGUAAAUACUUAUCGUGUACUCCGUAUUAUUCAGUGGAAUCAAUGAAUCAGACAGUCACUUCAGUGUCUUUUCUUAUAAUGUGUUGUUGGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.95%
ME_num:
MEP:
2.44%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
1.00
Avg Expression:
1.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 6.00539990255262 | 0.0100006218362627 |
2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.90461049299167 | 1.16774986668065e-05 |
3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 7.67281949662624 | 5.50928626532662e-05 |