Chr:
Chr5
Start:
26596415
End:
26602503
Strand:
-
Ref_name:
OSA-LNCN5472
Sequence
(OSA-LNCN5472.1):
ACACUGACGGUUCAACUCUUAGCCUCUUAGGAAGAGCAUUGAGCAACAAGUUUCUGCUGUUCGUGUUAUAAUACUACCAUGAGAUUCCUCAAGUAGAAGAAGCUUCAGUUCAAUGACAGGGAUGUGUUUCAGUCUUCUCUAGGCUCUAGCUACCUAACCUUCUUGUAUUGUAUAUAUAGCAAUAUCUAGCGUUGGUUUUCUGAAGGAGACAGAACUCGAUCCGAUACCAAAUCCCAUUAUUUCUGCCGUUGAAUGUCACCGAAUCAUCACAGCGGACAGUGGAUUAUGUUUUAUGUGUGGAUCGAUCAGAAGAAGCCAAAGAAGUUCCCUGUUUCGCUGUCGUUUGAUUUGUCUUUGGCCUUUGUAAGUAUCCCGCUUCAGUACUCGGUAGCAGUAUCUUCAGGGAUACUGAGUAUAGUAGUCGUACUGGCAGGAAAUUGAAGGCCGGCAAUGGCAGCUUCAAGUACCCGAUUUACUACUACAGGAGGGCACAGUUAGGUUGGCAUAUGAUUGGAUCAUUGGAGCAGCAGGGUACGGAAACAAAUCCUCGGCAGUACUAGUAGCGGUGAUUGACGUGUGGGUCCGGAGCCACACGUCAAUGUCUGCUACUGUAUCAGUAGUACUGCAGACAAUCCACACUGGUAAAGUACUACCUGAUCUACCAUGGGAUCGCCAUUUGCCGUAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.34%
ME_num:
MEP:
61.99%
HE_num:
HEP:
16.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.85
Avg Expression:
18.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.77901605254131 | 0.0202601270631734 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.67482872622868 | 0.0121282731406085 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.91039720254246 | 0.00433221475820687 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.07642874236747 | 0.00310615276040537 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.28190116085118 | 0.0367813094311875 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.45954543880637 | 0.000616232668115413 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.13164188818205 | 0.0197630987828474 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.08320364871278 | 0.0415354736904073 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.36122905162355 | 0.00135979158359998 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.38355162085497 | 0.0390956934393261 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.06327220524961 | 8.74063658867761e-05 |