Chr:
Chr5
Start:
26555313
End:
26560908
Strand:
-
Ref_name:
OSA-LNCN5471
Sequence
(OSA-LNCN5471.1):
CGCGUAAUUUCGUAAACCGCCAACUAAAAUCUCUCCGUGACCGUUCGAUCACGUUUGGACGGUAGGGAUUCUUUAGAUGCCCUGGCUCGUGACGUCAUCAUCUUCUUCCCCCAAACCGUACGGAGUCCGGUUCUAGUAGCCUCUUAAUCAAAAAUCGAGAUUUAAUCCAGCAAAUUAACCGAGACGGAGAUGGGGUUCCCGACGCUGAAGCGGCUACUGUCCAUGCAGAAGGAGCGGCGGCUGCGUCAGUAUCAGCGCUGGCGGCGGAAUCGGCCACCGCGGCAAAUCCAAGACCGUAGAAGCCGCCUCUUGCGCUGUGUACACAGCAAAUCCUCAGCCAUGAGUUUCAGCAACAAUUCAGAAGGAAAUAAGCCGAGCAAAGCCUGAAGACAUACAGAGACAGAGCAGCUCAGAACCUUAGCCCUCCUCACAAGAUGAGCAAGCUACAGUACCUUUACCUUCCUUCCUAACACAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.46%
ME_num:
MEP:
44.51%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.85
Avg Expression:
2.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.28248915474785 | 0.0273345584077423 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.49025224856778 | 0.0323023915070988 |
3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.97071018492913 | 0.0113515533362176 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.29615978771988 | 0.0428770729542161 |
5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.25693105275802 | 0.000274733082930016 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.03281155162582 | 0.0402538453113627 |