Chr:
Chr5
Start:
25120901
End:
25121359
Strand:
.
Ref_name:
OSA-LNCN5443
Sequence
(OSA-LNCN5443.1):
GUCACCCGCUCGGUAGGAGUGGUGGUAAACUAGUGCGUGCGUGAGUUUUGUUUGGUAGUCCGUGUUAAGGUGUUAGACCAGUUGGGAUACCAGCUGGAAUACACCACCUAAGUCUUCUGCGUUUGUGAAAAUCGUAUUUGUUUGCGUGUGCUUUGUGAAAAGUUGUUGUGGUGUGGGAAUCGUUACCAGAAUCAGCCUAUGUGGCAGAUAGAUGACCUGACUGGUCAAGAAACGAAUCUGUGUGAUUCGGGAUGUCUACGGGCAUCAUAGACUAGGCUUCCCGAGUGGAAGCGGAUUGUUGUGCUGCUGGGCAGUUGGCCUCUGGGAGUCCGAGAAAAUGAAAAGGCUAUGGGAGCCGCUUAAUCAAGUGAAAAGUCUAGUUUGCCUCCCUCAGGUUCGGUGGGACGAUUCCCCUCUCGGCCCAUCUCUCUCUCUCUCUCUCUCUCUCUCCCUCAGCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.92%
ME_num:
MEP:
3.25%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
2.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.7381809989515 | 0.0127269394284063 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.82823759620616 | 0.00827819297417168 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.24945118024674 | 0.0302483802685219 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.41493247432995 | 0.0241590484992836 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.79111699535816 | 0.00725806998612853 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.26289670940965 | 0.00306214569152675 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.53477867838272 | 0.020408388323719 |