Chr:
Chr5
Start:
24783328
End:
24785464
Strand:
-
Ref_name:
OSA-LNCN5420
Sequence
(OSA-LNCN5420.1):
GGUACGUUGAGAUACAUAAGGAGGUAACCGAAUUUGCUAUACUCUCUCUAGUACUAGUACAACCUGCUCCAAAUGGCCUCUAACGCUUCUCCAACUCCACUCCACCUUCUUUUCCAAAUACAAGAAAUGCGUCCUUUGCGUGGACGAUGGCCGUGAUGAGAUCACGCGUGCACGCUUGUGUAGAAAUGUGGUUAUAUAGCUAGGAGUAGGAUGCAUCGUGAACGCGAGCCCGAAGACAUCGAGGUGAAGUGGCGUGUUCAGUGGGGCGGCGCCGCUCGCUGGGAUGUCCGUUCUACCGCCAAUAUUGUAAUCCUACUAGCCUUCUUUAUGUUGUCGUCUGCUCGAUCUUUUGCUAGCACUAGGUGGCUUGCAUUGAACAUGUACGUGUGCAAGGCUGGGAUUGAGAUUACCACUGCACCAUAGGACUCUAUGUAUUGCAAGCCAUUGAUUUUGAUCAUCAACAGCUGAUAUUCACUGCUACAGUACUCAACCAACAGUAUAUAUAAACAAUAUUUUAUACGGCAACACGGCUUUGCUACAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.11%
ME_num:
MEP:
28.86%
HE_num:
HEP:
38.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.89
Avg Expression:
71.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 8.95906864761445 | 2.77464842538325e-19 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 7.94178274533984 | 2.87878541181312e-15 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 11.6465964280959 | 1.80385578690669e-32 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.74379728064609 | 5.45152498194755e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 11.1371303990782 | 1.82569438978826e-29 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 8.48526908767238 | 4.99194310837786e-17 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 4.32031461469032 | 0.00105112137813924 |
| 8 | IR64NIL // root // control--/--IR64NIL // root // Al | -1.68590263137208 | 5.90255280497083e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 6.4138046577708 | 2.81251493283055e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 9.20622238978302 | 1.88474713394124e-20 |
| 11 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.87273469520486 | 0.0354778998774102 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.11715137692749 | 0.00480748605537491 |
| 13 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.25453396213147 | 0.000161457373228933 |
| 14 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.86097606527899 | 8.26684456283493e-07 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.11185797488087 | 0.0164319182546676 |
| 16 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -4.36732538838956 | 0.0115445414605774 |
| 17 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.42058779648454 | 0.000790120863805774 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 6.51538425371012 | 1.00744546363314e-09 |
| 19 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.05059370931635 | 9.89833774343531e-20 |
| 20 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.44106085774302 | 0.00296499354306897 |
| 21 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -2.64969706795401 | 0.0203648540769597 |
| 22 | 9311 // leaf // control--/--9311 // leaf // salt | -5.50874106968917 | 5.71483669574233e-10 |
| 23 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.52951582353153 | 6.92686001451556e-06 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 9.07356865369009 | 3.903493325865e-20 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 9.9911015645017 | 8.49543404549123e-24 |
| 26 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.96980379322862 | 0.0239950332306106 |
| 27 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.69270730997066 | 8.59976620391038e-10 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 9.5069834924699 | 2.67057915978835e-21 |
| 29 | 9L136 // leaf // control--/--9L136 // leaf // salt | -3.59306516565674 | 1.92244449176965e-15 |
| 30 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.73534776804659 | 0.0225445201348314 |
| 31 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 8.96502688400583 | 1.36006501705123e-19 |