OSA-LNCN5414


Function Link


Basic Info

Chr:

Chr5

Start:

24460657

End:

24462708

Strand:

+

Ref_name:

OSA-LNCN5414

Sequence
(OSA-LNCN5414.1):

CGAGGUAUUAUCACCGGCGGAACAUGGCACCAAACGCGGGGCUACAUCGCUUCGAUCUCCGGCGAAGGGUUGCAGGAUCAAACUGACUGGCACGCCCGCACCUCAUCUAAAUCUAGGACCUGCACUGGAGUCAAGCAAAUCUCUCGGGCCUUCGUGUGAGUGACGAAAUUUUACGUCAACAACCAGGCCACAACAAAAGGCAUCAUUAGUUGGAUCAAAGACUUUGUUGCAUGAUGAAAGUUUUAGUUAUGUAUAUUUCAUCUACCAUCGUCUACCAUAUAUAGUUGUAUCGCUUUUUCUCAUCGCCAAACCCUAGUUCCGAACCUCAUAAUUUUCAUACAGUUUUGCGUUGGUUGAGUUUAGCCCGCUCAUCAUGUCCAAGUUUAGUUACAUUAGGGUUAGGUAUUUCCAUCAUUGUCGUCAUCAACAUCAUAUUUGAUCAAAGUGAGAAUUAUCCCUUCAAUAGAAGAUCAGGUAGUGUGAGCGUCGUCAAUUCCACCCUUGUCCACGUUGCAAUGAAUGGCAUCACACAUAACAUGAGCCAACCUCUUUCUUUGUGGAAUGUGGUAGGCAUGGAGUUGCUCAUUGUACACUUGUGUGUAGAUGCAAUAGUCACUAAUAACAUUUGGAUUCCAUUUUGACCUUACCAAUAAGUUGUUUAACUAGAGUCAACUAUGUUAUACAAUCUUGGUGGUAUCACCCAAUGACAUCUAGACCGCCUAGAUUUGUACAAUUGAUCUAGCAACACUUGAAGCAAACAAUUCGGAAGCGCGUACCUUUGUUGACAAGGUUCAACAAGAUGGCUACACCCCCCAAGAGCUGAGAUAGGCGACUUCAUCCCUUCGAUUUAUUCGAUGCUUGGGUUCAACUUGUUUUAGGUUACAUUUAUACCACAAAUACAGUAAUCCAACUCAACUCAAACUGUUGCACCAUAAUUUUAUACGAACACAAGUUUGUACAGGGCUGACCCCAUCUUUCUUUCACAUCAUUUCAUCUAGGAGCAAAUCGCCUAUCACUUGGUCUAUCAACCCCUUGGUCAUGACAAGGGUCGCUAUGGUCCAUCAACCACCUAUCUUGUUUGAGUUGUACUUAAGAGCAAGUUUAAUAGUAUAGCCAACUACUAGCUCCAAAUCAUCUAUAGUCAAUUUAAUAGCCAAUUCAUACAAUAGUUACCUACUACACUAUUAAUAUAUGAUCCCACCUGUCAUACACACAUUUCGUCUUGGAGUCAGUGCUGCAGCUGGCUACAAAUUUGUAGUCUGUUGCUCUUCUCUCUCCUCUUUUCUCUCCUCUCCUCUUUUCUCUCCUUAAAAUAUGUUUAUAGCUGACUUAUAGUCUGCUAUUGUACC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

293

LEP:

59.55%

ME_num:

187

MEP:

38.01%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.78

Avg Expression:

3.00

Tip: OSA-LNCN5414 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.057507387242770.00764555229628919
2Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"2.546951471162670.0150441423377663