Chr:
Chr5
Start:
24460657
End:
24462708
Strand:
+
Ref_name:
OSA-LNCN5414
Sequence
(OSA-LNCN5414.1):
CGAGGUAUUAUCACCGGCGGAACAUGGCACCAAACGCGGGGCUACAUCGCUUCGAUCUCCGGCGAAGGGUUGCAGGAUCAAACUGACUGGCACGCCCGCACCUCAUCUAAAUCUAGGACCUGCACUGGAGUCAAGCAAAUCUCUCGGGCCUUCGUGUGAGUGACGAAAUUUUACGUCAACAACCAGGCCACAACAAAAGGCAUCAUUAGUUGGAUCAAAGACUUUGUUGCAUGAUGAAAGUUUUAGUUAUGUAUAUUUCAUCUACCAUCGUCUACCAUAUAUAGUUGUAUCGCUUUUUCUCAUCGCCAAACCCUAGUUCCGAACCUCAUAAUUUUCAUACAGUUUUGCGUUGGUUGAGUUUAGCCCGCUCAUCAUGUCCAAGUUUAGUUACAUUAGGGUUAGGUAUUUCCAUCAUUGUCGUCAUCAACAUCAUAUUUGAUCAAAGUGAGAAUUAUCCCUUCAAUAGAAGAUCAGGUAGUGUGAGCGUCGUCAAUUCCACCCUUGUCCACGUUGCAAUGAAUGGCAUCACACAUAACAUGAGCCAACCUCUUUCUUUGUGGAAUGUGGUAGGCAUGGAGUUGCUCAUUGUACACUUGUGUGUAGAUGCAAUAGUCACUAAUAACAUUUGGAUUCCAUUUUGACCUUACCAAUAAGUUGUUUAACUAGAGUCAACUAUGUUAUACAAUCUUGGUGGUAUCACCCAAUGACAUCUAGACCGCCUAGAUUUGUACAAUUGAUCUAGCAACACUUGAAGCAAACAAUUCGGAAGCGCGUACCUUUGUUGACAAGGUUCAACAAGAUGGCUACACCCCCCAAGAGCUGAGAUAGGCGACUUCAUCCCUUCGAUUUAUUCGAUGCUUGGGUUCAACUUGUUUUAGGUUACAUUUAUACCACAAAUACAGUAAUCCAACUCAACUCAAACUGUUGCACCAUAAUUUUAUACGAACACAAGUUUGUACAGGGCUGACCCCAUCUUUCUUUCACAUCAUUUCAUCUAGGAGCAAAUCGCCUAUCACUUGGUCUAUCAACCCCUUGGUCAUGACAAGGGUCGCUAUGGUCCAUCAACCACCUAUCUUGUUUGAGUUGUACUUAAGAGCAAGUUUAAUAGUAUAGCCAACUACUAGCUCCAAAUCAUCUAUAGUCAAUUUAAUAGCCAAUUCAUACAAUAGUUACCUACUACACUAUUAAUAUAUGAUCCCACCUGUCAUACACACAUUUCGUCUUGGAGUCAGUGCUGCAGCUGGCUACAAAUUUGUAGUCUGUUGCUCUUCUCUCUCCUCUUUUCUCUCCUCUCCUCUUUUCUCUCCUUAAAAUAUGUUUAUAGCUGACUUAUAGUCUGCUAUUGUACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.55%
ME_num:
MEP:
38.01%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.78
Avg Expression:
3.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.05750738724277 | 0.00764555229628919 |
2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.54695147116267 | 0.0150441423377663 |