Chr:
Chr5
Start:
24451475
End:
24453120
Strand:
+
Ref_name:
OSA-LNCN5413
Sequence
(OSA-LNCN5413.1):
GGCGAAUCGGUCGCCGUUGCGUCUGCCGCCAGCAAGUCUCCGCUCUCCGGGUCGCUAACAACUGGGCUGUUGGGCUGUAGGGACACAGGAUCCACAGGAGGAGGCGAGCGGACCGGUGCUUUCGUCGACGCGUCAGGGUGUGAUACGGGCAAUCGAAUUGCUUCACGUUUUCUGGUUCGGCGUGAUAGGACGAUUUGAUGGAUCUGCGGACCAGUGCGUUACAUGGCUCACAAGGAGCCAUGUGGUUCUUUCCUGUUCUGAGGGGAGGCCUCGUCCGUCGUUGCCUCGUUGGCGGUUGCUCCAUCAGCGUGCGUGUGAGAUCUGUGCAGGGCACGUCCUCCCCUCAUGAUGGUACGAGCGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.98%
ME_num:
MEP:
23.98%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
2.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.51275648346758 | 0.0220779476352775 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.9224181027844 | 0.0149652685223227 |
3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 4.62536247185045 | 0.0436863771249953 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.97287910196452 | 0.0339236472122611 |
5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.98322013630553 | 0.0163039668125139 |
6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.76417984428951 | 0.0377631054852827 |
7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.41851842707029 | 0.0454753817361256 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.26405528937082 | 0.0130304194691105 |