RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5408

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

24123559

End:

24124304

Strand:

+

Ref_name:

OSA-LNCN5408

Sequence
(OSA-LNCN5408.1):

CAACAUUUAAUAGAUGUAUCAGAAUUACAAACCAUUGUUCAUGAGUCAUGACAAAUAGACAGCCAACAUAUUCAAAAGCUGAAUCAUCUUUUCUUGAACCAUCAUAAACACAUCUGAUGAUUGCCAACCCAUUCCUUGAUAAGCAUUAAAACUACGAAAAAGCUAAUAUAUGGUUCAUCAAAUUAUAAUCUAGAGUUUGGGUCAGUUUUCCCUUGGCAGUCAUUCAACAACCAACACCAAUUCUAGAAUAUCUGUGAUAUAUUAAUGAGGCUAUUGUCUAGUUAAUAUAUCAAAAAGGUGACAGAAGUGCAAGAAGUGCCAAUGCCAAAAUAAGCAUAUAAGAAACAAAGAUUAGAUCAACAUCUUCCACCAUUGAAGAUGGAAUACUACUUAAGGACUACUAUAUAUGCAAGAUGUGAAGAGAUAACUUGAUGUAUAUAGUAAAAAUACAAAAGAAUAUGCUAAGUUCUAAAGAUAAUUAUGGAUCAUCAAAUUUAACAAGUGAUGAAUAAGCCACCACUAUUUGCGUCCUAGUAAUAUGCAACAAAAAAGAAGUUGGGCACUAAUGCAGAAAUCAUACAAUAAAUAGUACUCCCUCCGUUUCACAAUGUAAGUCAUUCUAGCAUUUCCCACAUUGUGAAACAGAGGAAGUAUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

127

LEP:

25.81%

ME_num:

359

MEP:

72.97%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.66

Avg Expression:

2.64

Tip: OSA-LNCN5408 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.436070265588780.0411753658729545
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.898556115071770.000827906719085983
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.305371850549740.0366872663351949
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.404701289750690.0460083762802429
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.625822420128640.00772590897261604
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.372333436339260.0273701134611786
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_121.69064632167720.0123114613127867
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.663669393164350.00853112698422943
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.915155113727510.000152430038282457