Chr:
Chr5
Start:
23578749
End:
23580205
Strand:
-
Ref_name:
OSA-LNCN5395
Sequence
(OSA-LNCN5395.1):
GGGGAUAGAUGGCGACGCGGUGUUGUAGCUUGCGGUUGCAGUUAGGGUUGAAAGUGUUUCGGAUAAUUUCCGACCGACCGGACCAUUUUUCGGAUACGGAUAGUUUCAGUCGGAUAUAUCCAAAAAUUUUCGGAUACGGAAAAGAAUACGGAUAUUUUUUUGCGGAUACGAAAACGAAUAUGAUAUAGAUGAUAUCCGUUGGAAUCGGAUAACGGUCGGAAAGUUUCUGGUUUUUUUCUGACUUACAAGAAACCCUAGAAGUCUCCAAUCUCCAUCCAUUCAGAUCCAGUCCACUCCCAGUCUCCCACCGUCCAGUCCCAGACAGAGUCCCACAGGCGCACGAUUCCUCACCUCCUCAUCGGCCGGCGCCGCCGCGGGGCCAAGCCGUCGUCGCCUCCUCGCUGCGGGGCCAAGCCGCCACCGCCGCCGGGACCAAUCGCCUCCUCGCCCAGUCGCCACAUCGCCGCCGUCGGAGCAACCCACGCCGGCUCUGCCGCGCCCCAUCGCCUCCUCGCGCCGUCACGCGCCACAUCGCCGCCGCCGGGCCAAGCCAACGCCGCCGCCGCGGCGCCCCAUCGCCUCCUCGCCUGCCUCACCGUCAAGCCCCAAGAUUUGUGUAUAUGUGUUAUGUGGCAGAUUUGUGAUGAAUUCCUCUCAUGCAAGUAGCAGCAGCAGCUUCAGCUUAUGCAGUGCGAGUGUAGCAGCAUUGCAAACACCAACUCAGCAUUGCAGACUUCAGAGUUUAGACUAAAAAGAUUGGUUGACAUUAUCUGGCAUGCCUAGUAGUGCUUUGCCUUUUCACUUCACAUGAUGAUGGAUGGUAUUUCAUAAUAUCAGUGUGUGCAAGUUUGUGGUUGUUUAUUAUUAAUUGCUAAAUUUUGAAAAUGUUGAUAUGUCCUAUUAGAAAAAAUAAUGAGUUAUAUUUCUUCGUUGAUUUGUGAUGCUUAGUUUGAGAGGUUUUUAUAUUCCGAUUAAUAUUCGUCACCGUAUUCGUUUCGCUUGCUCCGUAUUUGUAUUCGAUAAUAUUCGAUUAUGUUUUCAUAUCCGGGUAUCCGUAUCCGAUUCUGAUUCCGAAAAAAAAAAUGAAAACGAAUACGAUAUAGCUAGUUUCCGACCGUAUUCGAUCCGUUUUCAUCUCUAGUUGCGGUGCCUCUGUCUCUGUGGCUAAGGGUUGAGUUCCUCUAGGGUUUGGUUUAUUGGGCCUACUGGGCUAUAAUUUGGUUUUCUCGGUUAAUUCGGUUAGCAUUCGGUUAGCCGAGGCUAAUGACCGAAUUAACCGAAUAAAUUUCGGUCUUUCAAUUGCCGAGAUCGAACUACUAACCGAAUUUCUCGGUCUCGGUCUUUUCGGUUCGGUUUUUCAGUUCGGUCUUAUUCUGCCCACCCCUACGCAGG
Sequence
(OSA-LNCN5395.2):
GGGGAUAGAUGGCGACGCGGUGUUGUAGCUUGCGGUUGCAGUUAGGGUUGAAAGUGUUUCGGAUAAUUUCCGACCGACCGGACCAUUUUUCGGAUACGGAUAGUUUCAGUCGGAUAUAUCCAAAAAUUUUCGGAUACGGAAAAGAAUACGGAUAUUUUUUUGCGGAUACGAAAACGAAUAUGAUAUAGAUGAUAUCCGUUGGAAUCGGAUAACGGUCGGAAAGUUUCUGGUUUUUUUCUGACUUACAAGAAACCCUAGAAGUCUCCAAUCUCCAUCCAUUCAGAUCCAGUCCACUCCCAGUCUCCCACCGUCCAGUCCCAGACAGAGUCCCACAGGCGCACGAUUCCUCACCUCCUCAUCGGCCGGCGCCGCCGCGGGGCCAAGCCGUCGUCGCCUCCUCGCUGCGGGGCCAAGCCGCCACCGCCGCCGGGACCAAUCGCCUCCUCGCCCAGUCGCCACAUCGCCGCCGUCGGAGCAACCCACGCCGGCUCUGCCGCGCCCCAUCGCCUCCUCGCGCCGUCACGCGCCACAUCGCCGCCGCCGGGCCAAGCCAACGCCGCCGCCGCGGCGCCCCAUCGCCUCCUCGCCUGCCUCACCGUCAAGCCCCAAGAUUUGAUUUGUGAUGAAUUCCUCUCAUGCAAGUAGCAGCAGCAGCUUCAGCUUAUGCAGUGCGAGUGUAGCAGCAUUGCAAACACCAACUCAGCAUUGCAGACUUCAGAGUUUAGACUAAAAAGAUUGGUUGACAUUAUCUGGCAUGCCUAGUAGUGCUUUGCCUUUUCACUUCACAUGAUGAUGGAUGGUAUUUCAUAAUAUCAGUGUGUGCAAGUUUGUGGUUGUUUAUUAUUAAUUGCUAAAUUUUGAAAAUGUUGAUAUGUCCUAUUAGAAAAAAUAAUGAGUUAUAUUUCUUCGUUGAUUUGUGAUGCUUAGUUUGAGAGGUUUUUAUAUUCCGAUUAAUAUUCGUCACCGUAUUCGUUUCGCUUGCUCCGUAUUUGUAUUCGAUAAUAUUCGAUUAUGUUUUCAUAUCCGGGUAUCCGUAUCCGAUUCUGAUUCCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.53%
ME_num:
MEP:
66.26%
HE_num:
HEP:
13.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.77
Avg Expression:
10.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.76524985138816 | 0.0324739413733852 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.48901502116379 | 0.00204666990870763 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.46759064351804 | 0.00202409510401998 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.39422585406683 | 0.00159537720477436 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.33010729959418 | 0.0300699790334623 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.37076392443348 | 0.00172599794028894 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.58678263883401 | 0.00127412766703922 |