Chr:
Chr5
Start:
22750376
End:
22750942
Strand:
.
Ref_name:
OSA-LNCN5384
Sequence
(OSA-LNCN5384.1):
CCACUGUUCCAGUGACAGCCAAUCAGGCAAUCACCAAUAUUAAUUCAUUGAUAUCGUUCGUCCAUUCAAUCAUUCAUCAAAUGCAGACUGCUUGAUUCGUUGCAAUCGUCCAUUCAAUCAUUCCAAUGCAUACUGCUUAGUGCGUGCAUAGCACGGCUGCAUCCAUCCAGUUUCCAGACUUUUUUUUUCUCAAAACUUAAUUAUUUUCUUAAGAUCCAGUUCUCGUUUUAUAUCAAGCUAUCUUUGCACGUCGACCUCACGAUCUUUACGGGCACAAAUGCAUCAGAUAUUCAGAUCUUUAACAAUCGGUAAACUUGUGAAGAUAACCGAAAAAACAUAAACGGAAGCAGAAACCGGCACAAAUCGUAGUCGUGUAAGCCACGGGGAGAGGAGGAGAACCCGAGGCCGCCGCGAAAGACGGCAGCCGGGAUCACCCACAACUCGAGCCCCCCAUGGCAAAAUCACUCUACGCCCCCAGAACAAGGCCGUCAAGAGUGGAUUCGUUCUCUUGCAGCCGAAAGAAGAGGCGACCAAACAAGCACACACAACAAAAAGAAAAGGAGAGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.18%
ME_num:
MEP:
23.98%
HE_num:
HEP:
14.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.94
Avg Expression:
40.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.83859112667393 | 6.84861237520037e-26 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.65234154061863 | 2.32643037533504e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.17970317706608 | 1.14316414205141e-39 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.29815649743666 | 0.0128018656786104 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.288740833961 | 2.89674145844525e-10 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.6552908692502 | 1.36980187780894e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.94707945698067 | 2.91523752900476e-29 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.40023283487226 | 2.32284016085816e-53 |