Chr:
Chr5
Start:
22582977
End:
22583875
Strand:
-
Ref_name:
OSA-LNCN5381
Sequence
(OSA-LNCN5381.1):
UGGAUACCUCCGCUACUAAAGAUAGAUGUAGAGAGAAGCAUCAGGCCAUCAAGCUGUAACCAAUUUAACAUUCUUUAGAAUGGUGACUCAAACUCCUAUGGCUGAUAUCCAAGAUUCUGGAAUCCCACUAGGACAAAUUUAAUGAUAUGGGUUAAAGAGAUGAUACACACUAUAGGUGAGUGAAAACUGUUAAUAUUAGGAUGCUCUACACUAAAUAAUUAUAGGUCAAUACAACAUUGAGUAAAAACAAAAUUAUGUGGUGGGAUGUCUGAAUCAACUUUCUUUGGUGAUUCCCUGUUAGCGCAGUUUCUCUAAGUUUUAUACUCUUUUUAUAGUAAUCAUAUAAUGAGGUUAUGUUAACUACAUCUAAGAUUAUAAAGACAAAACGAAAUCUACAUGUUACAAUAAUAAACAAGUGAGUCCAAAAUGUUGCGGGCAUUGGGUCGGCCUGGUCCAAGUGAGGAUAUUGGGGAAAAUCGGGUGCAUAUGUAAGUUUAAGUCAUUAAAUAAAUAACUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.66%
ME_num:
MEP:
19.92%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.93
Avg Expression:
2.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.87371929433271 | 0.00104844562290895 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.51821015493359 | 0.0148598466199948 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.40696689507368 | 0.0408109885006833 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.15699705635307 | 0.0239044017419331 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.35971233207654 | 0.000326518862208428 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.47013068929478 | 0.00778400471397112 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.93628199647411 | 0.0070626816318333 |