Chr:
Chr5
Start:
22603037
End:
22603997
Strand:
.
Ref_name:
OSA-LNCN5380
Sequence
(OSA-LNCN5380.1):
GGCCAAUCCUAUAGAGAUUUUGGAGGAAAUUUAGCAAAAGCUUCAAUCUCUUAGUAACUUUGAGUCUAUCUCUCUCAUCUAAUUCCUGUGUUUUUUCUGCGGUUCAAUCAAACGGCCAUUCCUAUGUUUUUCCUCUAUUUUACAAUCAUGUGUUUUACACUUACAUUCCUAUCAAAAUCCUACGUUUUAUCAAUCCUGCGAUUCAAAGAGGCCAUAAAUAAAGACAAGACUCACUAGAGAUUAUGGGUAGGGUUAGGAUUUCGGAGGUAAAGGGAGAUAGAGCCAGGGAGGUGCAUCGAAUUUAGAGGGAUGGCACCGAAGGUCAUGAAAAAAGGACAGCGGCGAGAUAGCGAUGGCGGCGCCAAAGCCGCGGGGUCGGCCAUGGGCCGUGGGCCGGUGUUGGUGGCGGGGGCAAAGCUAAACGAAAUAGGGGAGGAGGAGACCGACCGAGCAGGCCCGCGCUGACAAGUUGACGCCUUUCAGUGCCGACAAGGCCGGGUGGUGGCACGGUCAGGAGGUGGUGGUGGGAGAAGGUUGGAGUCGAAACUGACCCUUGUUUGGAUUUCGCCAUAGGAGGAGCGGAGGGAGUUCGCCAGAGGAAGCUCGCCGGAGAGGCCGUCGCCACUCCAGGAGCCCACGCACCGUGCUUCAGCCCCCGCUCCUGCUCCCGUCGUUGAUGCCGUCGUCCACAGAAAGAAAGUCGCAUGUUAAAAAGAAGGUAGAGAGAGUAGGAGGAGGGGCUAAUGCGCUGGGCUGUUGGAAAGAGUUCGCGGUCUUCGAGCGCCGGCCCAUUGCACCCACCCCCUUGUUUCGGUGUUUGGAGCGGAGAGAGGCAGGUGUGGGCCGUCAUGGGCUUUUGUUGCACCCUGUACCGCGAAAACAGCUGCACAGAUGCACAAGAUCGAUUCGUCCAAUGGAAUUGUUCAGUACACCGUAGCUUUCUCGCCUGUUUUAUGCUUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.7%
ME_num:
MEP:
5.28%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.73088712176558 | 0.0175092450078131 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.83482448068448 | 0.011413343649515 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.98102571615166 | 0.00921135068216123 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.22511312905756 | 0.0403985138921669 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.39308315802572 | 0.0324208741758575 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.13534054066357 | 0.0235428555650498 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.18769988366078 | 0.0124337572995806 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 8.84014992981826 | 1.03893394667978e-07 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.91399591247693 | 0.00122626550729968 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.79605997553366 | 0.0105098587056781 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.27305201369698 | 0.00497152132155233 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 5.93261347388158 | 0.0176809080054833 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.68721604513934 | 0.0184560377901799 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.41405010268272 | 0.00278048690514216 |