Chr:
Chr5
Start:
22200509
End:
22201449
Strand:
-
Ref_name:
OSA-LNCN5375
Sequence
(OSA-LNCN5375.1):
CGUACUCUUUAUAAACAGUGGAUGGUGAAAUGAAACUGAGUUUACUCGAGGGAAUUGCAUUUUGUAAAGUUCAUAAGUUAAUUUUGAAAAGUUCUCUAAGAAAUACGAACGAAGAAAGGUUUUGCAAAAGGUGUACCGUUUAAAAGCUUGGGAAGUGCACCGUGAUAAUCCAUAAUACAUAAGCUACCGAAAACAUGCGUGUGUUGCAAUUGUCUCGGUGAUAAUUGCGUUGCAUUUGUUAAAAUGUAAGUAGAUAAUGCCGCAGCCUUUUAACAAGAUAUGAUCAUUUACUGAUUGUGAACUGUAGUCUCUGUGGUCUCUUUCGUCUCGGUCUUUGUGGUCUUGGAGUCCAUUCUUCAGGAAGUCUGGUUGUGGUCUGUUGUUGGCACCGUAGGUUUUGAAGACUUGUUGGGACAUUAGGGUGGCUCCACCGUUUUUUCCUCCCUCUAUAUAGGAGCAGUUUUUUCGUUAGCAGUUCUUUUUUCGUUUCCUUUCCGUGUUCUUUUUUUUUUCUUCCAUUCCCCUGGCAAAUGUCUCCAUGGCCUGUUACGUUGUAUAUUAAAAUCUUGCUCUCUUCUAAUAUGAUGACGUGUAAUUUUUUUACGCGUUUGCGAAAAAAAAACUGUAGUAUUUCAGAUGUCCAGGAACAAGAUGAGCAUUUCUUCAAAACAAAAACAAAACCAAGGGCCAACCAGGCAACCACCAUUGGAGAAAUUCACUAAAAGAUGAGGAACUACUGUACUACCAUAUCAGAUGUCAAUCGAGCACUACGAGGACUAAAGACAACCUAGGGUACCCAAAAGAAUGCUGUUAUGUGCUAUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.36%
ME_num:
MEP:
2.24%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.94
Avg Expression:
0.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.71123315701106 | 0.0149975034948312 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.81519087333135 | 0.00943238651189946 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.96405643808317 | 0.00686416479260483 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.20422973945002 | 0.0357373142404318 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.07661375431504 | 0.00501358009382277 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.77807546259644 | 0.00800312958318553 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.25671125812317 | 0.00321021065023011 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.66618718945307 | 0.0154437546326633 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.39896878747215 | 0.00163459722328528 |