Chr:
Chr5
Start:
22225214
End:
22227171
Strand:
+
Ref_name:
OSA-LNCN5372
Sequence
(OSA-LNCN5372.1):
CUAAAUUCACUAUUGAAAUGACCUAUUUUCUUAGGCAUGCCAAAAUUUGGCUUCAAACCAAAUACACACUAAACACUAUUGAAAAUACCAAAUAUUAGUAAGCCUAAUUUAGGCCUUAAACCAAACCAGUCCUGUGUUUCGGAAACAACGUAACCUUAGUUUUUUAAGACAAAUUACCAGGCCAGUUAUGUCCGUGAGACAGUAAUUGGUCCGAACAAAAUUCUCUUAUCCAUAAAACCUCAUCUUCCGUAGGCCUUGUGCUUGGGUAGCAGUUCUAAAAAGAAUAAGCCCCUCCCUCCAUAUAGGUUUAAUCUUGUUUGUAUUUCCACAAUACCAGAUAUUAUAACACCCUAACUAUUAGAACUAGAACUGGUGUAAUUUAACUCCCUCAGCGGUUUACGCUAACGUGGCUUGUUGACUAGUCCAAUCAACAGAGUCAGCAUACGAGCCCCCCUCCUCCAUUCUUUCUUUCUUUCCACCCUCGCCGAUCAUCGCCGUUAUCUCCCCGGUCCGCUCCUCGCGUUACUCUCUGGGUGAAGUUCUCGAGCUCCAGAUGGCGCCCUUGAUCUGGCAUGUCAAGGAGAAGCAGAAGUAGCCACCACGGGCAAGGAGUGGUAGCACCAGAAACAUCCCGAGCAGCAAGGAGCAGCAGCUCGCGCGGAGCAGGUCCCACCAUCACGAUGGUGGGUGGAGUAGGGAGCUAGCAGUAGCGAGCAUCGACUUCUCCCUCGAUCUCACCCCAGCAAGAGCUCAAGCCGUGAGGUUGACGGCUCCUUCCUGGCGGCGCGUGGGGCAAGCAGAGCUCGACCUUGGAGCAGCUUAGAGAAAGGAGGGGCCGUCGAGGGUUGGCUUCUGCUUCUCCAUGGCUCGAUCAGGUGGGCUUCCCAAAGCUUUUGGAAGGUUCUCGCCCAAUCGAUUGGAGACGAGGGAGCAGCAAAUGGCUGCCACGGUGCUCACCAGCCUCGCCACCACGUCCUGUGGUGUUGUCCAACGGUGGACACCGCACAGGCCGUCCCUUCUUCCUCCUACCACAGGGCAAUGCUCCUCGCUGACCACAUCCUCCACCGCUGCUGCAGCAGAUCCCUCCCUCUCCUCCGCUGGCGGUGAUGUCAGGGUGAGGCUGCCCGCCCAAUUCUUCCUCAUACCACAGGCAGCGCUCCCUACGGACCGACGCCUGACUAGCGCGUUUCCACCGCCGCAACGGAUCCCUCUCCCUCCUCCGGCGGUGGCGAUGCCAUAACAAGACCAUCGGGGCCAAACCUGAGUUGUGUAGUUGCGCCGAGCAUGAAGGAGAAACUAGAUUGACUAGGGAAAAGGAGAGAGGGGGAAGAGCGUUGAUAAGUGGGUUCUGUGGUUUUUUAAUUUUUUUUUCUUGUCACUUACAUGUGGUCCACACUUAUAGUUUGUAUCUAGACUAUUGCGUCAGUACAGAUGGACCAAGUCAAUGUGAUAUGUUAGCAAGCGAUCCCGGACUAGUUGGAUCGGCUGGUGUUUGAUCAAUGUCUGGUUGUGGCUGGUGUUCUUUUUAGCAAAAAUGGAAAGAAAUGUGUGUAUUUAGUAAUCGAUGCAUGAGUGCAUGAUUAGCGAGUUCAGAGUGCCAUGCCCUAAUCAGGCUAUCGCAGGACUUGUGAAUAGAAGGGAAUAAUAUCAUACAUGUAUAUAUGUGAACCGCGGUUCAACCGCCUAGGCCACCAGUCAAUCGGGUCACCCACCAGUUCAUUUUUUUUUACUAUGAAUAAUGGCGGCAUCGGUGACGACGGAACGGAGACACAGCAUGAGGAAGAGUCACUGAUGAUGGCACUAGUAUCUGGGAGGGGGGAGACACGGCGUGUGGAAGAGCCGCUAAUGCUGGCAUCGUGGAGGGGGAGAAGGAAGGGUGUGACAAAGGGCUUGGGAAGGCUUGGGAAGGAGGCAUUGUCGCGUCGACAUCCUCGAGGUAAGGAGGAAGGGCAGGGGGC
Sequence
(OSA-LNCN5372.2):
GUUCUCGAGCUCCAGAUGGCGCCCUUGAUCUGGCAUGUCAAGGAGAAGCAGAAGUAGCCACCACGGGCAAGGAGUGGUAGCACCAGAAACAUCCCGAGCAGCAAGGAGCAGCAGCUCGCGCGGAGCAGGUCCCACCAUCACGAUGGUGGGUGGAGUAGGGAGCUAGCAGUAGCGAGCAUCGACUUCUCCCUCGAUCUCACCCCAGCAAGAGCUCAAGCCGUGAGGUUGACGGCUCCUUCCUGGCGGCGCGUGGGGCAAGCAGAGCUCGACCUUGGAGCAGCUUAGAGAAAGGAGGGGCCGUCGAGGGUUGGCUUCUGCUUCUCCAUGGCUCGAUCAGAUCCCUCCCUCUCCUCCGCUGGCGGUGAUGUCAGGGUGAGGCUGCCCGCCCAAUUCUUCCUCAUACCACAGGCAGCGCUCCCUACGGACCGACGCCUGACUAGCGCGUUUCCACCGCCGCAACGGAUCCCUCUCCCUCCUCCGGCGGUGGCGAUGCCAUAACAAGACCAUCGGGGCCAAACCUGAGUUGUGUAGUUGCGCCGAGCAUGAAGGAGAAACUAGAUUGACUAGGGAAAAGGAGAGAGGGGGAAGAGCGUUGAUAAGUGGGUUCUGUGGUUUUUUAAUUUUUUUUUCUUGUCACUUACAUGUGGUCCACACUUAUAGUUUGUAUCUAGACUAUUGCGUCAGUACAGAUGGACCAAGUCAAUGUGAUAUGUUAGCAAGCGAUCCCGGACUAGUUGGAUCGGCUGGUGUUUGAUCAAUGUCUGGUUGUGGCUGGUGUUCUUUUUAGCAAAAAUGGAAAGAAAUGUGUGUAUUUAGUAAUCGAUGCAUGAGUGCAUGAUUAGCGAGUUCAGAGUGCCAUGCCCUAAUCAGGCUAUCGCAGGACUUGUGAAUAGAAGGGAAUAAUAUCAUACAUGUAUAUAUGUGAACCGCGGUUCAACCGCCUAGGCCACCAGUCAAUCGGGUCACCCACCAGUUCAUUUUUUUUUACUAUGAAUAAUGGCGGCAUCGGUGACGACGGAACGGAGACACAGCAUGAGGAAGAGUCACUGAUGAUGGCACUAGUAUCUGGGAGGGGGGAGACACGGCGUGUGGAAGAGCCGCUAAUGCUGGCAUCGUGGAGGGGGAGAAGGAAGGGUGUGACAAAGGGCUUGGGAAGGCUUGGGAAGGAGGCAUUGUCGCGUCGACAUCCUCGAGGUAAGGAGGAAGGGCAGGGGGC
Sequence
(OSA-LNCN5372.3):
AGCAUCGACUUCUCCCUCGAUCUCACCCCAGCAAGAGCUCAAGCCGUGAGGUUGACGGCUCCUUCCUGGCGGCGCGUGGGGCAAGCAGAGCUCGACCUUGGAGCAGCUUAGAGAAAGGAGGGGCCGUCGAGGGUUGGCUUCUGCUUCUCCAUGGCUCGAUCAGGUGGGCUUCCCAAAGCUUUUGGAAGGUUCUCGCCCAAUCGAUUGGAGACGAGGGAGCAGCAAAUGGCUGCCACGAUCCCUCCCUCUCCUCCGCUGGCGGUGAUGUCAGGGUGAGGCUGCCCGCCCAAUUCUUCCUCAUACCACAGGCAGCGCUCCCUACGGACCGACGCCUGACUAGCGCGUUUCCACCGCCGCAACGGAUCCCUCUCCCUCCUCCGGCGGUGGCGAUGCCAUAACAAGACCAUCGGGGCCAAACCUGAGUUGUGUAGUUGCGCCGAGCAUGAAGGAGAAACUAGAUUGACUAGGGAAAAGGAGAGAGGGGGAAGAGCGUUGAUAAGUGGGUUCUGUGGUUUUUUAAUUUUUUUUUCUUGUCACUUACAUGUGGUCCACACUUAUAGUUUGUAUCUAGACUAUUGCGUCAGUACAGAUGGACCAAGUCAAUGUGAUAUGUUAGCAAGCGAUCCCGGACUAGUUGGAUCGGCUGGUGUUUGAUCAAUGUCUGGUUGUGGCUGGUGUUCUUUUUAGCAAAAAUGGAAAGAAAUGUGUGUAUUUAGUAAUCGAUGCAUGAGUGCAUGAUUAGCGAGUUCAGAGUGCCAUGCCCUAAUCAGGCUAUCGCAGGACUUGUGAAUAGAAGGGAAUAAUAUCAUACAUGUAUAUAUGUGAACCGCGGUUCAACCGCCUAGGCCACCAGUCAAUCGGGUCACCCACCAGUUCAUUUUUUUUUACUAUGAAUAAUGGCGGCAUCGGUGACGACGGAACGGAGACACAGCAUGAGGAAGAGUCACUGAUGAUGGCACUAGUAUCUGGGAGGGGGGAGACACGGCGUGUGGAAGAGCCGCUAAUGCUGGCAUCGUGGAGGGGGAGAAGGAAGGGUGUGACAAAGGGCUUGGGAAGGCUUGGGAAGGAGGCAUUGUCGCGUCGACAUCCUCGAGGUAAGGAGGAAGGGCAGGGGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.12%
ME_num:
MEP:
78.25%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.67
Avg Expression:
2.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.34704815087688 | 1.27090805717777e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.44751599192349 | 2.263035538009e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.8574793994919 | 1.05242981212894e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.80757897786001 | 0.00264454586593267 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.33448786871106 | 1.74582564214471e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.42330589226797 | 3.03491301493411e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.0018537830525 | 5.23090584180408e-09 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.22852019695363 | 0.0386722727936645 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.29737171139776 | 3.30191969590029e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.66630158967311 | 4.2423506189744e-11 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.23179989542728 | 0.0436763457322106 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.80467229878304 | 0.028762067108696 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.21873583559279 | 0.017406927128204 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.56244133419548 | 7.15527595192986e-08 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.2111196827848 | 0.0235190339648538 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.05373516101485 | 5.82805246845254e-06 |