Chr:
Chr5
Start:
21898597
End:
21899323
Strand:
-
Ref_name:
OSA-LNCN5370
Sequence
(OSA-LNCN5370.1):
CGCGGCAGGUUGAUAAGUCGUCUCGGAAGGGAAAAGGUAAUAAUGGAAACCAAGCUGCAUCUUGGUGGACGCUUGGUAGAGCAAGCUUCAUCAGAGGGGAGUUGCGGGGCAUCCGAGCUUGGAAUCAAGUGGGUCGCUUGGAAUACAAACUUGUCCUUGGUGGUUGCUUGAAGAGACCAAGACACUAUCAGAGGUAGUAGCUUGAAGAGGAAAAGGCUUAAUCGAAACCCGGCUCUUCAGACCUCCUUAUGGUUUCAUGAUUGGUUGGAUUCGAAUUCUGUAAACAAAUCGGUGACAAACUACCUAAGUUGAGAAGAAAUAUACAUGAAGGAGGAGGAGAAUCAAACGUGUAUCCGAACAUAUGGAGUUUUGGACCCAGAAACCCAAUUAAACACCUCCAAAUGGGCCUUCUAUCCAUACCAAUAGAAUGAGGGGGCCAAAAUGAGUGUCCAGGCCGAAAUUCGGAGCAAACGGUGCCGUCCCAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.11%
ME_num:
MEP:
4.47%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.8781573605225 | 0.0325205825521936 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.9763004455255 | 0.0227267896205469 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.08972785177186 | 0.00379583938486605 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.09838041735538 | 0.0481730329175102 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.34283397598686 | 0.0227880682205956 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.19781186724977 | 0.00272412290962712 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.80770916387121 | 0.0110489922217446 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 5.69028081452517 | 0.0484189815129232 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.93501989320948 | 0.0194836993305824 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.37733348390723 | 0.00166304795458767 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.79844977097343 | 0.00912878960657432 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.51272967314454 | 0.000828608829683995 |