Chr:
Chr5
Start:
21897457
End:
21898016
Strand:
.
Ref_name:
OSA-LNCN5369
Sequence
(OSA-LNCN5369.1):
GUGCCACUGCGGAUAGUCCGAUAACACAUGGUGUUGGACAAUCUAAUCAAACAUAGAGAAAACAGGAAGGAACUCACCUAUUACAUGUAUAGAUCUGAACAGUUCGACAAUACCAAGCGUCACACAAUCUGACCAUAAGGGACAAUCCGGUUUUAUACAGAGAAUAUGAAACCUAUAUGAGGUAUGACACUUUGCACACUGUUGGUAUUUCUUACGAUCACAGAUAAAUCCGCAAGUACACGGAAUAUACUGAUGUAGCACUUCACUCGGGAUUAUUCUCAUGCAUCGAUUUCCACAGGGAACGUGUGUGCUAACUCCAGUUUAGGUUCAUCCAAGGACACGAAGCUAUAGAUAGGCAAAGGAUAGAGAGGUUUCACCGGUGAAUAACAAUGUCUACGAAAAGCUUAACUUUAAUCCUAAUAAGGUACUUCGGACACUGGCCAGCUCGCUGCUCCCAGAUAUCGCUCUACUGCGCACCCGGACAGGGAGGACUUCAGUGAUAUUGAGGACUGUCACCACCUCUACACCCACCUCACACCUACUGUGGGAUGCGGAGCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.33%
ME_num:
MEP:
3.66%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.34637859002941 | 0.00974654617181595 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.4481600174516 | 0.00630870472643176 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.5574061490061 | 0.000649439356087683 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.59324229799049 | 0.0469389613717453 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.84269844685457 | 0.0248983502344663 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.13004322481441 | 0.0460458035939272 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -3.54240807551877 | 0.031419227130089 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.66812808501954 | 0.000436797710225768 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.31351770321713 | 0.0128998233031586 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.37107013721766 | 0.000825172379903481 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.00429457831037 | 0.00479236167733186 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.30222444544514 | 0.00997579873158815 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.98797304118113 | 0.00010560306476374 |