Chr:
Chr5
Start:
22188441
End:
22189168
Strand:
-
Ref_name:
OSA-LNCN5368
Sequence
(OSA-LNCN5368.1):
CGCGCGGCCCGUGUCUUUCGGAAGGAGAAGGGCCUCUCCGGCUGCCGGUCUCCGUGUGUGUCGGAGAAGCGCCCCGCGCCGCCGCCGGAUCGCCGCCGGCUCUCCCGCUACUCUUCCGGGGAGUGGCCGAGUGGGGUACCCGAUUCCGGCAGGUUUGUAUUCCUCGCCUCGUCCGAACCCCGCCGCCGCGUCGUGGCCGUGGUCAGUGCCGGAUUCCGACUGCUCGCUGAGCUCGCUCAGGCCCGUCAUGGCACACUCGCAUCCCCCGACCACCUCCGCUCGUCCCGAUUCCUCUGCGUCUGAGGCCUCCUCUCCGCCGUCUUCGACUUCCGCCUCGACACUGCCUCCUGCCUCGAUGUAAGAUGCCCACUACAACGAAUCAGAUAACGUCAAGAACAGGGGAAGUGUGUAUGGACUAACUACAAUCAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.72%
ME_num:
MEP:
40.45%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.76
Avg Expression:
3.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 2.73276813102545 | 0.0493445770511385 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.94273346221565 | 0.00867292717645487 |