Chr:
Chr5
Start:
22030475
End:
22033099
Strand:
+
Ref_name:
OSA-LNCN5361
Sequence
(OSA-LNCN5361.1):
GAAAAAUAGAGGAGUGUCGCCCGCACACAAGUGGGUCACUUAAAAGGCUUGCACUCAAAAAUAAUUCUAUUUUAGUCCUGCCUCCUAAUCUAACCACAUAGUAAAAUAGCACUUCCCUCCCAUACUAUUAAAAAAAAACUUAGACUUUUCUUCCCUCUCCCCCCGCCCCCCUCUCUCCUCUCUCUCUCCCCCUUAUCUUCUCAGUUUCCUCUCCUCUCAUUUUCCUCUCUCUCUCUCACCUUCUCCUCUCCUCCAGGCGCAUGGCGCCGACACCUCCUCUCCUCCGGGCGGCUCUCGAUGGAGGGGUCGACGGCGGCUGGCGGGCACGGCGGGCUCGCGGGAGGACGUGGGGAGGCAGCCGGGAGCAACGUGCGUGCGGCCGACGACGACGAGGACGGCGAGGCGGCGGCCGGGAGCAGUGUGCACGUGGCUAACGACGAUGACGACGGCAGCGAGGCGGCGGCCGUGAGCAGCAUGCACGCGGCCGAUAAUGACGACGAGGCGGUAGCCGGAAGUGGCGUGCGCAUGACGACGACGACGGCGGCAAGGAGGCGGUCGGGAGCGGGCUGACGAUGUGUGCCGGGAGUGGGAGGAGGCGGCGGUCAGCAGCGUGCACGCGGCCGAUGACGACGACGACGGCCAGGCAGCGGCCGGGAUCGGUGCCGCCCUCCCCACGCCCGAAUCCGGCGGCGGUGGCAGUCUCCCACCCGGAUCCAGCGACGGCGGCAUAAUUUUUGCGUGCGGUUGCGCCACCAGCACAAGAAAAUCGCGAUUUUCUCAGAUGCAAUGUUCCAGACGGGCAAAACAACCGCACGAAAAAAUAGCUAUUGUAGUAGUGUUCACACUUUCCACUUCUGAAAUAUGUCCCGCAAAUUGCAUAGAUGCCCAUAAAACAUACAGGUUUAUUUGUUCCUCAUCUCCCAAAGGGUAAUACAGUCGGAUGAUACACUUGUUAAAACCAGCGGGUUAAUUUUGUCUCCCCAUGACAAUCCAUGAUUCUUUGUCCAUUGAUGAAACAACUAGUAAUUUACAGUUCACGUUCAGAACAAUGGUACUGCAAUCGAAACAAAAGUACUCCCUCCGUAUAAGUUGUUUGAUUUUUUUCUAGUUAAACUUCUUUAGAUUUAAUCAAGUUUAUAGAGAAAUAUAGUUGUAUUUUCAACACAAAACAAAAUAUAUUAUUAAAAUAUAUUCAAUAUAAGAUUUAAUAAAACUAAUUCGAUAUUUUAUAUGUUGCUAUUUUUUUUUAUAAAUUUGGUCAAAUUUAACAAAGUUUAAUUAAUUAGGAAAAAAAUGAAACAACUUAUAAUAUAUAUAAAACAGAAGGAGUAAUUCGUGAUAGCAAUUCACAAACGUACCCUAAGACAACACUACUACAAAACGUGAUAGAUGUUGCAGGUGGGCAAAACAAGUUUUUGCAGGUGACCCCACCUAUGACCAAAGGGCAGUGAAAAUCGAUGACCUUCAAUGUUCACAGGCGGGACUUCAUUGCGAGCAAAAAUCAAAUUUUGCAGACGGCUCGGUUAAGCCAACUGCCUAAAAAAUCGACCUUUCACAGGUGGGUUGCAACUGAUUUUCUGCCACUACUAGAAAAGACAUUUUUCUCGACAUGAGGGUCUCAUUUUCGCAGGCGGACAUAACCCUUAGAGCCAAAUGACCGUCUACAAAAAUAUAAAUUGGGGUGAAUGUACCGGUCCGCCUGCGAAAAUCAUUUUCGCAGGCGCCGCUUAAAUGGUCUGCCUGCGAAAAUAGACUUGAAUAUAAAUAGACUUGGAUAGAAGUAGAUUUUUUCUAAGUCUAGAAACCUCACCCCUCCCCUCACCCACGGUCGGCCUCUCCUCACCUCUCCUCCCCUCACCUCUCCACGGCCGGCCUCUCCCACGGCGGCUAUGGCGUGGGGCGGCGCGGAAGGCGGCGGCGCGGCGCGGCUCCCCUCCCUCCCUCCCCUCCUAGAUCUGGUCGGAGGAGAGAGGGUGGAGGCUGGCGGCGGCGACUACGGCGGCUACGGCGCGGGGCGGCGGCGGCGGCUCCCCUCCCCCUCCCUCCUAGAUUUGGUCGGAGGAGGGAGGGGGGAGGCCGGCGGAGGCUACGGCGCAGGGCGGCGGCGACGACGACGCGCGGGGCUGCGGUGGCGGUUCCCCUCCCUCCUCCCUCCCAGAUUUGGCCGGAGGAGGGAGGGGGGAGGCCGACGGCAGCGCGGGGUGGCGGCAACGACGAUGGCGCGAGGCGGCGGCGACGACGACGCCCGGCGCGGCUCCCCUCCCCUCCCCUCCUGCCCAGCGUAGCGACGCCGGAGGAGGGCGGCGGCGCAAGCCAUGCCCGUGAUUUUUUUUUGUUUUUUUAAUGGAUUUUUGCAAGCGGGCUGAAAAUCAAUGAUUUUCGCAGUCGUUGGCUACAGGCGGUCCAACCCCCGCCUACAAAAAUCACUUUUGGCCGCCUGGAAAAAAAUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.41%
ME_num:
MEP:
38.62%
HE_num:
HEP:
22.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.78
Avg Expression:
8.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.1940761841696 | 1.24240253413631e-18 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.15009332854212 | 0.0130983711556847 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.0130977162132 | 2.44754043642515e-21 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -10.5204257868634 | 3.25362484849891e-13 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.008932928465 | 0.000718769875531086 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.45487966161461 | 3.29418598417443e-10 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.03337222261276 | 7.96654913067215e-05 |