Chr:
Chr5
Start:
21797960
End:
21798923
Strand:
-
Ref_name:
OSA-LNCN5355
Sequence
(OSA-LNCN5355.1):
UUUAUUUGUAUCGUGAAAAUAUCUAAAUCCUACUAGAUUGAACAGUUAUAUUAUUUUUAUUUAAAAGGAGACUUUAACUAGCUUAAAUUCUCGCGAAAAAAAGUCCCCCAGAGUUCUCUUCCUCUCAGGUCCCUCUUCCUUCUUGUCUCCGGCGACUCGCCGCUGGUGAGGGGUCGGACCCCUAGUCUCCACUAGUAGAUGUAGAUUCGUCGGGUUCUCCCAUUUCCCGGGCUAGUCCUGUUUUUCUUCCUUUUGUGAAGAGCAAGAGUUCAGCCGGUGAUCGGUGCUCUCGUCUACGCUACUCCGGCCAUGGAGGACCUCGACGAUGUCUUCUCCAACGUGUGUCUCCGGCUUGGUGCUUGUGUGGUUCAUUCCCGUCGUCUACAACUGGAAGGGAGGCAAGUUUUCUCUCCAACUUGAAUAGGUUGCGUCGGCCAUUUGUUGCUUCUCCGGUGACCUCUCCACUUCAGCGUUGACCUUCUUCCUCGUCAGCGUCAACGGCUUCAACAGGUGCGGCUGAAAACUUCACUUUUAGCUUUGGUUGGCUCAACCUCCAUCUCGUGGAGGCCCCAUUUGGGUCCGCACAUCCAAGGCUUCAUCUCCUGCAGUUUAUCACAGUUUCUCUGUGCUCGUCGUCGUCACUCCCGCCGAUCUGGUCAUUAAUGUCGUGGAACUGAUGUACUGAAGGACUCGAUUGCUUUUUUUUUCAAAUCUUUGAAAGUCCUUAUGUGCAAAGAUGUUGCUCAAUGUGUAAUUUGCCCACCUUGUAGGGGCCUCAAUGUAAAACUGGCUGACCUUUCAGCUCUCCUAAUAAAUGUUAUCUUAACCUUAACUAGCUAGUUAAUGGCUUAUGGUGACGUGUGCUUCCAACUAUAAGUCAUUGACUAGCUAGUUAAGGUCUCCUUUAAACAAAAAGAAUAUAGAUUUUAUAAAGUUAUUGUAAAAACUUUUAGAUCCACAUGAG
Sequence
(OSA-LNCN5355.2):
UUUAUUUGUAUCGUGAAAAUAUCUAAAUCCUACUAGAUUGAACAGUUAUAUUAUUUUUAUUUAAAAGGAGACUUUAACUAGCUUAAAUUCUCGCGAAAAAAAGUCCCCCAGAGUUCUCUUCCUCUCAGGUCCCUCUUCCUUCUUGUCUCCGGCGACUCGCCGCUGGUGAGGGGUCGGACCCCUAGUCUCCACUAGUAGAUGUAGAUUCGUCGGGUUCUCCCAUUUCCCGGGCUAGUCCUGUUUUUCUUCCUUUUGUGAAGAGCAAGAGUUCAGCCGGUGAUCGGUGCUCUCGUCUACGCUACUCCGGCCAUGGAGGACCUCGACGAUGUCUUCUCCAACGUGUGUCUCCGGCUUGGUGCUUGUGUGGUUCAUUCCCGUCGUCUACAACUGGAAGGGAGGCAAGUUUUCUCUCCAACUUGAAUAGGUUGCGUCGGCCAUUUGUUGCUUCUCCGGUGACCUCUCCACUUCAGCGUUGACCUUCUUCCUCGUCAGCGUCAACGGCUUCAACAGUUUCUCUGUGCUCGUCGUCGUCACUCCCGCCGAUCUGGUCAUUAAUGUCGUGGAACUGAUGUACUGAAGGACUCGAUUGCUUUUUUUUUCAAAUCUUUGAAAGUCCUUAUGUGCAAAGAUGUUGCUCAAUGUGUAAUUUGCCCACCUUGUAGGGGCCUCAAUGUAAAACUGGCUGACCUUUCAGCUCUCCUAAUAAAUGUUAUCUUAACCUUAACUAGCUAGUUAAUGGCUUAUGGUGACGUGUGCUUCCAACUAUAAGUCAUUGACUAGCUAGUUAAGGUCUCCUUUAAACAAAAAGAAUAU
Sequence
(OSA-LNCN5355.3):
UUUAUUUGUAUCGUGAAAAUAUCUAAAUCCUACUAGAUUGAACAGUUAUAUUAUUUUUAUUUAAAAGGAGACUUUAACUAGCUUAAAUUCUCGCGAAAAAAAGUCCCCCAGAGUUCUCUUCCUCUCAGGUCCCUCUUCCUUCUUGUCUCCGGCGACUCGCCGCUGGUGAGGGGUCGGACCCCUAGUCUCCACUAGUAGAUGUAGAUUCGUCGGGUUCUCCCAUUUCCCGGGCUAGUCCUGUUUUUCUUCCUUUUGUGAAGAGCAAGAGUUCAGCCGGUGAUCGGUGCUCUCGUCUACGCUACUCCGGCCAUGGAGGACCUCGACGAUGUCUUCUCCAACGUGUGUCUCCGGCUUGGUGCUUGUGUGGUUCAUUCCCGUCGUCUACAACUGGAAGGGAGGCAAGUUUUCUCUCCAACUUGAAUAGGUUGCGUCGGCCAUUUGUUGCUUCUCCGGUGACCUCUCCACUUCAGCGUUGACCUUCUUCCUCGUCAGCGUCAACGGCUUCAACAGUUUAUCACAGUUUCUCUGUGCUCGUCGUCGUCACUCCCGCCGAUCUGGUCAUUAAUGUCGUGGAACUGAUGUACUGAAGGACUCGAUUGCUUUUUUUUUCAAAUCUUUGAAAGUCCUUAUGUGCAAAGAUGUUGCUCAAUGUGUAAUUUGCCCACCUUGUAGGGGCCUCAAUGUAAAACUGGCUGACCUUUCAGCUCUCCUAAUAAAUGUUAUCUUAACCUUAACUAGCUAGUUAAUGGCUUAUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
74.8%
ME_num:
MEP:
24.19%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.85
Avg Expression:
1.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.21491156015608 | 1.25155618443318e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.68249407900063 | 0.00796273313722597 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.9872730140671 | 0.000123733852891927 |
| 4 | 9311 // leaf // control--/--9311 // leaf // salt | 1.59382360537136 | 0.00512785530601128 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.30935988125421 | 0.0317647772642699 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.99907342136508 | 0.00013040334890832 |