Chr:
Chr5
Start:
21320930
End:
21321826
Strand:
.
Ref_name:
OSA-LNCN5345
Sequence
(OSA-LNCN5345.1):
AAAGAGCUGACGUCACUUUUUACUUUUUUAGUCCCGGUUUAAAAGAAGACAGGCUGUGUCAGACCCCUCUAUUAUCUUUAGCCCCGGUUGGUGUUAUCAACCGGGACUAAAGAUCCAUUUUUAAUCCUGGUUCCUUAUAACAACCGGGAGAAAAAAAGAAAACGAAAAAAAAAUCGCAGAGCAAGCGCCGCGCCUCCUCGAUCCUCUCGCGCGCACAGCCUUACCCUCUCAUCUCUCCUCCUCUCCCUUCUUAUUUUCUCCAAUCUCCUUCUCAACUUCUCAUCUCCUCCUUCUCUUCCCCCUUCCUCCCCUUCACCUCUCUUCCCCCUCCCCUGCAGGCGCGGUGCGCGGCUCCCUCCCCGACGCAGGCGCGGCCGCGCGCAGUGGACGGUGGAUGCGGCCACGGCGGCGCAUGCGGUGGCGUGCGGUAGAAGCGGCCGCGGUGGGGGCCGGGCGGCCGCGCGGCGGCUGGGCUGCGGCCCGGUGGAGGGCGGCGGCCAGGCGGUGGUUGGGCUGCGGUUGUGGCGGAGCAGGCGACGGCGUGCGGAAGAAGCGGCCGCGGCGGCGGCUGGGCUGCGGCCUGGCGGAGGGCGGCGGGCAGGCGACGGCGGCAGUGGAGGAUUUGUUUUUUUUUCGGAUUUGUGAUGAAUUUGCUUUUGAGAAUUUGUGAUGUAUUUGAUCUGUGUGCGAUGUGAAUAUGUGAUGUAUUUGUGAUGUUUGUAUUUGAAGAUGGUGGAUUUGUAAUUGAUCGAUUUGAGAUUUGGAGAUGAUGUUUUGUUCUGUGAUUCUGGGGGAUGUGGUGAAAUCAAUAUUCAAAGUAGAAAACAAUACAAGAAAAGAGAAACUACCAACCGGAUCUGACUUCAUCUUUAGUCCCGGUUGGUAACACCAACCGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.94%
ME_num:
MEP:
38.62%
HE_num:
HEP:
27.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.71
Avg Expression:
9.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.51293658448222 | 1.34598000054197e-13 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.57298265902049 | 8.27675792360345e-05 |
| 3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.30128860908407 | 0.0280914164541564 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -8.97422083470868 | 3.61923095121357e-10 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.01112617359097 | 0.00861719749230152 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.16257008700253 | 0.00812355084083636 |