Chr:
Chr5
Start:
21254421
End:
21255713
Strand:
+
Ref_name:
OSA-LNCN5344
Sequence
(OSA-LNCN5344.1):
CCUUCUCCUCUCCCUCCGCCCCAUCUCGCCUCCCUCGCGGCGUACUCACUCACCUCGGCGUCCCUUGGCGGAUCCGGCGGCCCUCUUCCCCCUCCCUCUCCCUCCGUCCCCUCUUGUCUCCCUUCACAGGUGGCGGCUCCCUCCACCACCUCUCACCUCCCUCCCGCGGUGGACCCGGUGAUGGCGGCGUCGGCAGCAACGGCUCUCCCAUAGGCUGAUCCGGCGGCAGUGGCUCCUCCCGUGGUGGAUCCAGCAGUGGCGGGAGCAGAGAAGUGCUUGGAAGUUCUUCUUUCGUCUGUUUUUAGAUGUUGUUGUUGUUGUUCUGUGGUGUCGGUUCCUUUUGUGAUUUUGUGAUAAUGACUAAUAUGUGAUGGCAAUUUUGACUGUUGAGAGUUCGUUGUGGUUGAUUUUGGGGGCGAAUCGGGGUCGAUUCGAGCCGAUACAUCGAGCAGAUUUUUUUUUCAUCCCGAGAAUCUUAAAGGUUCCAUGAUGACCAGUUUGCCCAAUCUCAGGGCUCACCACUACUUCAGAUUAGGGCAAGAUUUUGGAUUGGUGGAACCUGCCUAAUUGCACUCCUCUGCUCUACAGAAGAAAAAUUGCACAUUACUUUCCCCUCAUUUGUUCUGCUAGCAUUGGUUCUUCCCCUGCCCUCUCCGAUGCUGCGGCUGGUGGGCGGCGGGUUGCGGCAGGCGGCAGCGGGCAGUGGGUCGCGGGCUGCGGCACCCUCAACUCUGUGGGAUGUGGUGGCCGGCGGCAGCGCCCGACGCAGCUGUCGCGGAGGGCGGCGGCCGAGGCUGCGGGCGAAAGCGUGGCCAGGGCUGGAGAGGGCGGUGACCGAGGUUGCGGAGGGCGGCGGGGCGUGGCUGUCACGAAGGAUUUUGUGUUGGAAAUAUAUGUGUUGAUUUUGUGUUGUAAAUUUGGGGAUGAUUUUUAGAUAUUUUUGUGAAUGAUUUUGUGUUGUAAAUUUGUUGAUGAUUUUGUGAUGUGAAUGUGGAUGAUUUUGUAAAUGAGGAUGAUUUUAUUCUUUAGUUCAUUUUGAAAUCAAUAUUCAAGCAGAAAGAGAACAAUGGAAAAGGAAAAGAAAAAAAAAUCUUUAGUCUCGGUUGGUACCAAUCGGGACUAAAGAUGGCGGAGCUGGGCACGUGGCUUAGCCAUCUUUAGUCCUGAUUGAUAUUACCAACCGGGACUAAAGAUUGACCUUUAGUCCCCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.94%
ME_num:
MEP:
10.77%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.92
Avg Expression:
3.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.16459791905653 | 0.00192557739972474 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 11.0493328700515 | 1.34253910705158e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.72177796113735 | 0.00180648413563454 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.42597161428192 | 0.0255202218881599 |
| 5 | Azucena // root // control--/--Azucena // root // Al | -1.01096496832423 | 7.45896479199189e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.27090767393331 | 0.000106109591897558 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 10.362809032741 | 9.26344448622304e-14 |
| 8 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -8.63535437962131 | 8.20413474367357e-09 |
| 9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -8.71173170334906 | 1.143745774081e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.79609327497525 | 0.00131245634295783 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.60290280829985 | 0.00140725097408122 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.47483457114544 | 0.0145587354842356 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.73332531998036 | 0.000340656818158293 |