Chr:
Chr5
Start:
20495721
End:
20507554
Strand:
-
Ref_name:
OSA-LNCN5332
Sequence
(OSA-LNCN5332.1):
CAGAGAAAGAGAAGAGGGGAAAUAGAGUAUAUGCUGACGUGGCACCCUAACAUGUGGGCUCACGUGGGGCCCACGCUUAGUCAGCUGCCACGUCAGACAAAACCGGAGUCAAAACCGCCGAGGGACCUAUUGUGACCGGUUUGGAUUAGUUAAGAGACGCCGGAUAUCUGGUUUUACGGUUGGGGGAUGAUUGUGUAAUUCGAUGGCAAGUUGAGGGACCUUCGGUGCACUUUUUCCUUUACCACAUGAGAACCCCUCUCUAGCCCACGACUGUGCACCACCCAUGGCCCAUGAGCUACCAAAUGAAGGCCGAACGCCAAGCCCAUGAGCAAGGGGAGACACGUCGACGCCUCGCACUUCGAUCACAGCCGCGCGCACACGCCGCAAAUCUCUUCGACUCCCGUUUUCUCAUUUUCUUUUUUCUUUCUUAUUCCCCAUCGCGGCACGUCUGUUCAUCAUCCGUCCUCGCUUUGGUGCUUGGAUGACGGCCGUCGGACGGUCGCAGCGUGAUCAGCGUCGCUGGCUCGCCGCGCCGUCCUUGCCUUUGGUCGCCCUAGCUAGCCGGCCGCCGGCAGCAGCGCAGGGCGCAGCAGCAGCUGGACAACGACUCCACGAGUCUCCAUGGGGCAGGGCAGCAGUCAGCGGAGGGGACGAGAUGUGCAUGGUAACUUUGCAGAGGUGAGACAAUGGACAGCCUUGGAGUAUCAGAGUUCUGAUAUGACACAGAGCAAGUCGAUGUACAAGGGAAUGGCAGUUUCUGGACUUUUGGAGGGAAAGGCCAUUAGCAGGGGAUCUCAUCCUCAACACAGAGCAUGCUUGCUCUGAUGGAGUUUUGGAAAAGUCCCAUGUGUAACUAGUCAAUCACAGAUGGAUGGAGAUCAUGGAGUAUUGGAGUCGUAGCAAUGCCAUCAUCAACAUCUACUUCGUGUUGCCCUUACUGACAACGAAACAGGCACCGGAAGUCUGAAAGGUAGCUCUUGACUCUGGCCAUGACACACAAAGGCCUGGAUAAUGUGCUUGCAAUGGAAACGAAAAGGAGUACAUGGGAAGGCCUGUGCACCAACUAUUAUCAAGACGUGGCAGGGAAGCUACACUCCGCCGACCUUUUCCAAGUCACGAGGCAGCGACAGGAGUCGGUGUCUCGUUACUCUCGCGAAGAAUAUCGUUGUCGUGUCUCUCCCUGUUUUCAAUUCUUCUUUUGUUUGAACUUUCGAGACACGUAUAAAUUAAACCAGACUUCACGACAGUGCAACGGGUUUAGCCCGUCAAUCCAUACUAUUUUUUAAGGUACCAAAUAUGUGUAUUUAUUUAGUUUUUUUUGUCAAACUUUGGUAAAUACAUAAGAAAUCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.85%
ME_num:
MEP:
8.54%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
1.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.78543220979662 | 3.87776410822364e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.36956308425214 | 1.61661178826306e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.09804877965036 | 1.17011876187429e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.37900654945701 | 4.84331436184782e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.86863394339578 | 4.49861803637194e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.676111788879 | 2.0624957576709e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.32974441610773 | 2.95332998891455e-07 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 5.7306126936333 | 0.0067355834880902 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.18321669584649 | 1.85664317812484e-11 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.81385894947832 | 8.66410722154446e-11 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.23990961969639 | 1.60787943851784e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.5401372279831 | 3.24882359670278e-14 |