RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN5328

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr5

Start:

20289138

End:

20290139

Strand:

+

Ref_name:

OSA-LNCN5328

Sequence
(OSA-LNCN5328.1):

GAAGAAAUUGCCUGACCCGAUACUAGCCUGAGUAUAACGCGAGGUUCUUUGGUUGUCUCCCUGGGACUCAAGAUUCCACGCCUGGCUUGAUGUCCUCCCGCACGUCGUUAGCCUGAGCCAAAUAGGUCGCCUGAGCUCCAGGCGAAUCCACUUACCACCGUAAUCUUCUUCUUCUAUCUGGAGAGAACGAUAGGAUUUCAACAGCCACACGCGUGCCCCCGCCGCCGCCGCCGCCGCCAUCGUCACGCGGAGCUGCUGCAGUUGUUGUCUCCAUCGCCGUCAUGUGAAUCAGCCACCUCCAUCCUUGCUGGAUUCACCGAGGAAGAGGCUGACUCGCCGGAUCCCUCUGCAUCCUGCUGCUUCGCUCUGUUGUAUCCGCCGUUCGCGUGAAGCACGGGAAGGAAGCAGGCACUGCAGCCAUUCCAGAUCUGAUACCGUGCAAGACACUGAAGGCUUUCAUGGUUUGUUUGAUUGAAUCAAUUGCCAACCAGCUGAAAGAAAUUGUUGCAGGUUUUGCUAGAUGCGUGGAUUUAGGGAUUUUUUUUUUCUUGUGUUUUACCGUUCUGUUUUCCCUUCAUGAUGUAUACAAGUGAUUUGUUUAUCAAAAGCUGGGUACUACAUUGAUUUAUUUGGAGGAACGAUGCAAUUUUGCCUCUUUUAUCCCUUCUUUUUCCCUCCUUCUAAUUAUAAUUAGUACCUGACUUAGCGGUUCUCAUCCAGAUCCUAAUCAUGUUUCUUCCUCUCAGGCAAAGGUACACAACCAAACAAGUAAAAUGUCACAACCCAAACAAGUAAAAUGUCAGGCUGCCUGACCAGGCCAUCUUCAUCAGCUUCUUCUAUGCCUGCCAGGCAUGCAAUUUUCUCAGGCAUGGUACUCAGGGUAUCAACCAAACAGGCCCUUAGCUUCUAGUCAAAAUGUUGUUACAUUUAUGAUGAACGGUUUGUUGGUCACAUUUUGUAGGAAAAAGUACGAAUUACCCCCCUAAUUAUCGCGGUCAACCG

Sequence
(OSA-LNCN5328.2):

UGGUUGUCUCCCUGGGACUCAAGAUUCCACGCCUGGCUUGAUGUCCUCCCGCACGUCGUUAGCCUGAGCCAAAUAGGUCGCCUGAGCUCCAGGCGAAUCCACUUACCACCGUAAUCUUCUUCUUCUAUCUGGAGAGAACGAUAGGAUUUCAACAGCCACACGCGUGCCCCCGCCGCCGCCGCCGCCGCCAUCGUCACGCGGAGCUGCUGCAGUUGUUGUCUCCAUCGCCGUCAUGUGAAUCAGCCACCUCCAUCCUUGCUGGAUUCACCGAGGAAGAGGCUGACUCGCCGGAUCCCUCUGCAUCCUGCUGCUUCGCUCUGUUGUAUCCGCCGUUCGCGUGAAGCACGGGAAGGAAGCAGGCACUGCAGCCAUUCCAGAUCUGAUACCGUGCAAGACACUGAAGGCUUUCAUGGCAAAGGUACACAACCAAACAAGUAAAAUGUCAGGCUGCCUGACCAGGCCAUCUUCAUCAGCUUCUUCUAUGCCUGCCAGGCAUGCAAUUUUCUCAGGCAUGGUACUCAGGGUAUCAACCAAACAGGCCCUUAGCUUCUAGUCAAAAUGUUGUUACAUUUAUGAUGAACGGUUUGUUGGUCACAUUUUGUAGGAAAAAGUACGAAUUACCCCCCUAAUUAUCGCGGUCAACCG

Sequence
(OSA-LNCN5328.3):

CCUGGCUUGAUGUCCUCCCGCACGUCGUUAGCCUGAGCCAAAUAGGUCGCCUGAGCUCCAGGCGAAUCCACUUACCACCGUAAUCUUCUUCUUCUAUCUGGAGAGAACGAUAGGAUUUCAACAGCCACACGCGUGCCCCCGCCGCCGCCGCCGCCGCCAUCGUCACGCGGAGCUGCUGCAGUUGUUGUCUCCAUCGCCGUCAUGUGAAUCAGCCACCUCCAUCCUUGCUGGAUUCACCGAGGAAGAGGCUGACUCGCCGGAUCCCUCUGCAUCCUGCUGCUUCGCUCUGUUGUAUCCGCCGUUCGCGUGAAGCACGGGAAGGAAGCAGGCACUGCAGCCAUUCCAGAUCUGAUACCGUGCAAGACACUGAAGGCUUUCAUGGUUUGUUUGAUUGAAUCAAUUGCCAACCAGCUGAAAGAAAUUGUUGCAGGCAAAGGUACACAACCAAACAAGUAAAAUGUCAGGCUGCCUGACCAGGCCAUCUUCAUCAGCUUCUUCUAUGCCUGCCAGGCAUGCAAUUUUCUCAGGCAUGGUACUCAGGGUAUCAACCAAACAGGCCCUUAGCUUCUAGUCAAAAUGUUGUUACAUUUAUGAUGAACGGUUUGUUGGUCACAUUUUGUAGGAAAAAGUACGAAUUACCCCCCUAAUUAUCGCGGUCAACCG

Sequence
(OSA-LNCN5328.4):

GCCAAAUAGGUCGCCUGAGCUCCAGGCGAAUCCACUUACCACCGUAAUCUUCUUCUUCUAUCUGGAGAGAACGAUAGGAUUUCAACAGCCACACGCGUGCCCCCGCCGCCGCCGCCGCCGCCAUCGUCACGCGGAGCUGCUGCAGUUGUUGUCUCCAUCGCCGUCAUGUGAAUCAGCCACCUCCAUCCUUGCUGGAUUCACCGAGGAAGAGGCUGACUCGCCGGAUCCCUCUGCAUCCUGCUGCUUCGCUCUGUUGUAUCCGCCGUUCGCGUGAAGCACGGGAAGGAAGCAGGCACUGCAGCCAUUCCAGAUCUGAUACCGUGCAAGACACUGAAGGCUUUCAUGGUUUGUUUGAUUGAAUCAAUUGCCAACCAGCUGAAAGAAAUUGUUGCAGGUUUUGCUAGAUGCGUGGAUUUAGGGAUUUUUUUUUUCUUGUGUUUUACCGUUCUGUUUUCCCUUCAUGAUGUAUACAAGUGAUUUGUUUAUCAAAAGCUGGGUACUACAUUGAUUUAUUUGGAGGAACGAUGCAAUUUUGCCUCUUUUAUCCCUUCUUUUUCCCUCCUUCUAAUUAUAAUUAGUACCUGACUUAGCGGUUCUCAUCCAGAUCCUAAUCAUGUUUCUUCCUCUCAGGCAAAGGUACACAACCAAACAAUAAAAUGUCAGGCUGCCUGACCAGGCCAUCUUCAUCAGCUUCUUCUAUGCCUGCCAGGCAUGCAAUUUUCUCAGGCAUGGUACUCAGGGUAUCAACCAAACAGGCCCUUAGCUUCUAGUCAAAAUGUUGUUACAUUUAUGAUGAACGGUUUGUUGGUCACAUUUUGUAGGAAAAAGUACGAAUUACCCCCCUAAUUAUCGCGGUCAACCG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

121

LEP:

24.59%

ME_num:

310

MEP:

63.01%

HE_num:

60

HEP:

12.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.68

Avg Expression:

4.79

Tip: OSA-LNCN5328 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-5.964997009871240.00418143151564863